PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28687.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TCP
Protein Properties Length: 241aa    MW: 27382.1 Da    PI: 5.1196
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28687.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.21.3e-33133208266
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 
                 + kkdrhski T+ g+RdRR+Rls+e+a+ fF Lqd+LGfdk s t+eWLl+++k+ai+el+++           +
  Dca28687.1 133 TSKKDRHSKIRTAHGLRDRRMRLSLEVARSFFNLQDMLGFDKGSRTVEWLLKNSKEAIDELVQSkngrpglqasrD 208
                 689*************************************************************555554444440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.5E-34133198IPR005333Transcription factor, TCP
PROSITE profilePS5136933.242135193IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MLNSSSTTFN NNFPILYEDN NIVFSQLSED TNPFAYYDNL QSPMFYYDVE NYVEYLSNHD  60
LIMVQQQEPL QATNGSPITT TDDSSIMENN NMELLSNDND NNNNNSNNNN ENNNGGVVLN  120
KPSMNRGSSK RRTSKKDRHS KIRTAHGLRD RRMRLSLEVA RSFFNLQDML GFDKGSRTVE  180
WLLKNSKEAI DELVQSKNGR PGLQASRDLI GGGGKDPPTK NSPPPEHSWQ ETTYPPPLAL  240
W
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021761260.14e-47transcription factor CYCLOIDEA-like
TrEMBLA0A0J8BBZ79e-44A0A0J8BBZ7_BETVU; Uncharacterized protein
STRINGXP_010695622.11e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.21e-27TCP family protein