PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28694.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 333aa    MW: 36127.9 Da    PI: 8.4826
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28694.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-08758347
                     SS-HHHHHHHHHHHHHTTTT.......-H.HHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.......tW.ktIartmgkgRtlkqcksrwqky 47
                     +WT eE++ + ++++++ +         W ktI++ ++ +++ +q+++++q +
       Dca28694.1  7 AWTREEEKAFENGIALHMSSldqiddeEWeKTISSLVP-TKSIEQIREHYQVL 58
                     6*****************99*******99679******.************86 PP
2Myb_DNA-binding40.37.4e-13159203347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       Dca28694.1 159 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVITRTPTQVASHAQKY 203
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.7E-4461IPR001005SANT/Myb domain
PfamPF002494.7E-6758IPR001005SANT/Myb domain
CDDcd001675.32E-7759No hitNo description
PROSITE profilePS500905.68859IPR017877Myb-like domain
SuperFamilySSF466896.14E-7866IPR009057Homeodomain-like
PROSITE profilePS5129417.81151208IPR017930Myb domain
SuperFamilySSF466892.51E-17154209IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-17155206IPR006447Myb domain, plants
SMARTSM007171.3E-10156206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-11157202IPR009057Homeodomain-like
CDDcd001676.15E-10159204No hitNo description
PfamPF002491.9E-11159203IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MPNLAAAWTR EEEKAFENGI ALHMSSLDQI DDEEWEKTIS SLVPTKSIEQ IREHYQVLVD  60
DVNAIESGKV ALPNYGSNNN EEEVLLSNCS KDKNNNNSNS NNSSSHGQYS KEQKGNSNNN  120
NNNNNNNNNG NGFSGFGVGN NSASSKASKL DQERKKGIPW TEEEHRLFLL GLDKFGKGDW  180
RSISRNFVIT RTPTQVASHA QKYFIRLNSM NRDRRRSSIH DITSVNGGGL STNQVPITGQ  240
QNSAPTQAVG GAVTAGANKH RTHANVAGAP NLGMYGTQIG HPVSGAPVAP LIPGHMGSAV  300
GTPLMLPPPG HHPHHPHYAV PMAYPMAPPP MHR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748976.11e-129transcription factor SRM1-like
TrEMBLA0A1S3UM881e-111A0A1S3UM88_VIGRR; transcription factor MYBS1
STRINGXP_010673224.11e-121(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-43MYB family protein