PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28743.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 661aa    MW: 75114.2 Da    PI: 9.3028
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28743.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.6e-09604650347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +W++  +  lv+a k ++++   +W+++a  ++ g+t +qck ++ ++
       Dca28743.1 604 AWSAVQERALVQALKTFPKEtpqRWERVATAVP-GKTMNQCKKKFASL 650
                      8********************************.*********99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.03E-1983176IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.9E-2194195IPR001623DnaJ domain
SMARTSM002711.8E-1397172IPR001623DnaJ domain
CDDcd062571.13E-1198169IPR001623DnaJ domain
PfamPF002261.7E-1798177IPR001623DnaJ domain
PROSITE profilePS5007618.74598180IPR001623DnaJ domain
PRINTSPR006251.5E-9103121IPR001623DnaJ domain
PRINTSPR006251.5E-9121136IPR001623DnaJ domain
PRINTSPR006251.5E-9152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.993463518IPR017877Myb-like domain
SuperFamilySSF466891.05E-6466511IPR009057Homeodomain-like
SMARTSM007172.9E-5467520IPR001005SANT/Myb domain
PfamPF002491.9E-5469510IPR001005SANT/Myb domain
CDDcd001670.00156470510No hitNo description
PROSITE profilePS500907.236597651IPR017877Myb-like domain
SMARTSM007177.5E-10601653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-6602650IPR009057Homeodomain-like
SuperFamilySSF466892.54E-9603657IPR009057Homeodomain-like
PfamPF002491.1E-7604650IPR001005SANT/Myb domain
CDDcd001671.55E-6604651No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MAQKKSSVRL ISYSQELEGG KPLYVSSNCV PFKVSKFEPA GHAFHAVALK LSGHFEEDSD  60
SDTQSLSSDK EKSYTPSFDS YSSKSKKKTG ADGKQQQDHY ALLGLAHLRY LATEEQIRKS  120
YREVALKYHP DKQASLLLAV EGEAAREAKK DEIENHFKAV QEAYEALIDP QKRRIYDSTD  180
EFDDEVPTEC APQDFYKVFG PAFMRNSRWS VNQPAPPLGD DDSPFEEVDK FYDFWYAFKS  240
WREFPHADEF DVEQADSRDH KRWMERQNAK LSEKARKEEY TRVRSLVDNA YKKDPRIVRR  300
KEFEKAEKQR KKQAKFLAKK LQEEEAARAA EEEKRKKEEE DKRAAEAAQL LKKAKEKEKK  360
LLRKERTRLR TLTAAIVSQR ALDISADDIE TLCMSLDMER LKNLCDKVDG KATEEQAKHL  420
KDSLGRQDNS EPQKIEEPIK KVVEKSPKQN GNVSSNGNMS SGSSEKKEKP WGKEEIDLLR  480
KAMVKYPKGT SRRWEVVSEY LGTGRSVEEI LKATKTVLLQ KPDSSKAFDS FLEKRKPAAT  540
IASPLSTRDE VQGIPAVSNV KVENITTPAS GSSNEQQSNN SSNEQAPAAG TSSDPNHSVT  600
DQDAWSAVQE RALVQALKTF PKETPQRWER VATAVPGKTM NQCKKKFASL KETFRNKKTT  660
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1818729713123Zuotin
5dje_B1e-1818729713123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-118DnaJ domain ;Myb-like DNA-binding domain