PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28762.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family SRS
Protein Properties Length: 355aa    MW: 38055.5 Da    PI: 8.2302
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28762.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702209.58.5e-651062803154
      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrelkskkqsalsst 89 
                 s t+sCqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvpa+ rr r +  ++++  +aa+             +    kr++++k++++s++++t
  Dca28762.1 106 SRTISCQDCGNQAKKDCPHMRCRTCCKSRGFDCATHVKSTWVPATVRRLRNSSSSSSAGAQAAAVgldeeesqghfgH---FKRRKDHKNNSSSTQHNT 201
                 6789**********************************************8877777666665557787777664431...334444433333333333 PP

      DUF702  90 klssa.eskkeletss.............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                 +++s+ + + +++ts+             +P+evss+avf+cvrvss+d+ e+e+aYqtav+igGhvfkGiLydqG+ +
  Dca28762.1 202 NTTSStQLPVTTSTSNtsaayisgmelgnFPAEVSSPAVFKCVRVSSIDETEDEVAYQTAVNIGGHVFKGILYDQGPYH 280
                 33322022333333336667788999999***********************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-61108278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.4E-26110151IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.6E-27231278IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAGYFSNNNN NNNNSGSGSE PQKYLNYRED NQLQPPSSST PYNNYYDNAA AAAASQLWSQ  60
QMLYHHHHHH HHEPAARSED AAAKLTMLRR TDTAASTDLG VGGTDSRTIS CQDCGNQAKK  120
DCPHMRCRTC CKSRGFDCAT HVKSTWVPAT VRRLRNSSSS SSAGAQAAAV GLDEEESQGH  180
FGHFKRRKDH KNNSSSTQHN TNTTSSTQLP VTTSTSNTSA AYISGMELGN FPAEVSSPAV  240
FKCVRVSSID ETEDEVAYQT AVNIGGHVFK GILYDQGPYH SSSSGRGRGR GRGESSSGGG  300
GGGPLLNLTP RPTTSSAGVG PSSMIGPGYL DPAMYPAPFS PYMQPGTQFF HNPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9GQE72e-67A0A2N9GQE7_FAGSY; Uncharacterized protein
STRINGXP_010679824.15e-67(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.17e-56Lateral root primordium (LRP) protein-related