PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28764.1
Common NameCMB2
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24757.6 Da    PI: 10.2525
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28764.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.2e-271058250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ienk+nrqvtfskRrngi+KKA+EL vLCda+v+++++sst kl+ y 
  Dca28764.1 10 KIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYL 58
                69********************************************996 PP
2K-box75.91.1e-2571169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk +g++l+ +++e++q++++k+ + ++ L+re+ +++G dLe L+l eL  L+q++e+++ +iR+kK++ +++q+ +++kk k+l+e++++L ++le
  Dca28764.1  71 YQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDLVMELE 169
                 8999******************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.95161IPR002100Transcription factor, MADS-box
CDDcd002651.02E-38280No hitNo description
SuperFamilySSF554555.1E-34293IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1183167IPR002487Transcription factor, K-box
PROSITE profilePS5129713.05484174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKLEIRK IENKTNRQVT FSKRRNGIMK KAQELTVLCD AKVSLLMISS THKLHHYLSP  60
GVSLKKMYDE YQKIEGVDLW RKQWERMQEQ HRKVLELNSL LRREISRRMG GDLEGLTLVE  120
LSALQQEMEE AIIQIRNKKY HTIKNQTGTT RKKIKNLEER HTDLVMELEA KFRGPQFAIG  180
EDDPRNYEAA AAAAVYGNDV AAANLFALSR HPIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-16171172MEF2C
5f28_B4e-16171172MEF2C
5f28_C4e-16171172MEF2C
5f28_D4e-16171172MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021718109.11e-104LOW QUALITY PROTEIN: MADS-box protein CMB2-like
SwissprotQ424981e-160CMB2_DIACA; MADS-box protein CMB2
TrEMBLQ7X9P01e-127Q7X9P0_SILDC; Flower buds-specific protein SiAP3Y
STRINGXP_010679828.17e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-58MIKC_MADS family protein
Publications ? help Back to Top
  1. Baudinette SC, Stevenson TW, Savin KW
    Isolation and characterisation of the carnation floral-specific MADS box gene, CMB2.
    Plant Sci., 2000. 155(2): p. 123-131
    [PMID:10814815]