PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca28785.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 293aa    MW: 32956.1 Da    PI: 9.8021
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca28785.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.16.3e-1530112186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W++  v +L+ea+++++   +r+klk+++We+v++ +     + +  ++++qCk+k+e+++kry+ + + + +       ++p+f++l+
  Dca28785.1  30 EWSEGAVTVLLEAYESKWVLRNRAKLKGQDWEDVARCVssrgNKSKSPKTQTQCKNKIESMKKRYRSESAAQLS-------SWPLFSRLD 112
                 5*************************************55444445567889**************99887765.......599999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-1828114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGEENTTQND QSPRKQPASA GGGDRLKRDE WSEGAVTVLL EAYESKWVLR NRAKLKGQDW  60
EDVARCVSSR GNKSKSPKTQ TQCKNKIESM KKRYRSESAA QLSSWPLFSR LDHLLRGTNP  120
PPPSQPLQLA AVVESSSMAV PTLEAPVVLL AQNQSQESTD VDAMVKENEG MRAKPCDQVT  180
DKNNKNDHDN HQETDSSTPA VYSSDRVKTT MKRKRQRRGK SRGLEEVSES MRWLVDAVVR  240
SEQARMDTLR DVERMRVEAE AKRGEMDVKR TEIIANTQLE IARLFAAVAG KKC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216KRKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670500.11e-112PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0K9R5821e-101A0A0K9R582_SPIOL; Uncharacterized protein
STRINGXP_010670500.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.16e-87sequence-specific DNA binding transcription factors