PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca28821.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 486aa MW: 55441.6 Da PI: 5.6902

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca28821.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.5	8.9e-08	97	188	4	90
FAR1 4 neYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF+v ++++ + + + ++r+f +ke + + ++ + ++ +++++ tgCka ++ +e ++ +++++++l+HnHel Dca28821.1 97 FTYAMKKGFEVFTRSNVINpEYKAAGVSREFGGKKEPRYHMFDRLrlackKGGRKCSENSNVTGCKAVFEGALE-NDGFQIKSVKLDHNHELD 188 58******999988877544555577788766666555554448888666677799999********9.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-6	97	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-32	309	402	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MSNNGGLFDL NEYFDEDFDG NDVFDEEIEA NEVHNDGRSV ESVANSIDEV GSTEESPNLV 60 QQAVNVVEAE NLNNDDIVEP KVGMIFPNCE SFAAFIFTYA MKKGFEVFTR SNVINPEYKA 120 AGVSREFGGK KEPRYHMFDR LRLACKKGGR KCSENSNVTG CKAVFEGALE NDGFQIKSVK 180 LDHNHELDPA NSRFTISARI ITDYFRKRIL LNDRAGIPIT KNFNAMVLEA GGHENLPFNR 240 RDLRNLVNLE RRLERINGDA AALEEYFVKM KADNPDFFYA IKKDNDGRLQ NVFWADARCR 300 AMFKVFGDVV TYDTTFLCNR YRLPFSPFIG VNHHGNSICF AAALITNEDT DTFIWVFERW 360 LECMGKAPPV ILSDQDKAIG KAIETVFPGT PHRLCLWHMM KNAVKNLGRY GFWKELCSDL 420 KAVVHDTLSE EEFEQGWSVM VAKFGVHDNA WIKEAYNIRK RWVPAYWRGT FCAGMSSTQR 480 SEQANR

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MSNNGGLFDL NEYFDEDFDG NDVFDEEIEA NEVHNDGRSV ESVANSIDEV GSTEESPNLV  60
QQAVNVVEAE NLNNDDIVEP KVGMIFPNCE SFAAFIFTYA MKKGFEVFTR SNVINPEYKA  120
AGVSREFGGK KEPRYHMFDR LRLACKKGGR KCSENSNVTG CKAVFEGALE NDGFQIKSVK  180
LDHNHELDPA NSRFTISARI ITDYFRKRIL LNDRAGIPIT KNFNAMVLEA GGHENLPFNR  240
RDLRNLVNLE RRLERINGDA AALEEYFVKM KADNPDFFYA IKKDNDGRLQ NVFWADARCR  300
AMFKVFGDVV TYDTTFLCNR YRLPFSPFIG VNHHGNSICF AAALITNEDT DTFIWVFERW  360
LECMGKAPPV ILSDQDKAIG KAIETVFPGT PHRLCLWHMM KNAVKNLGRY GFWKELCSDL  420
KAVVHDTLSE EEFEQGWSVM VAKFGVHDNA WIKEAYNIRK RWVPAYWRGT FCAGMSSTQR  480
SEQANR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853860.1	1e-149	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-71	FAR1-related sequence 5