PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29495.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 306aa MW: 34647.3 Da PI: 5.7498

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29495.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.3	2.1e-51	13	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelv++yL++++++ ++++ +i+e+d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + + Dca29495.1 13 LPPGFRFHPTDEELVMHYLCRRCASLSISV-PIIAEIDLYKFDPWDLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGK--PKP 108 79**************************.88***********8777889*********************************98..789 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 v +kk Lvfy g+apkgekt+W+mheyrl Dca29495.1 109 VAIKKALVFYAGKAPKGEKTNWIMHEYRL 137 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-61	9	168	IPR003441	NAC domain
PROSITE profile	PS51005	58.9	13	168	IPR003441	NAC domain
Pfam	PF02365	2.8E-26	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGVVGGGSDE LELPPGFRFH PTDEELVMHY LCRRCASLSI SVPIIAEIDL YKFDPWDLPE 60 KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPIGKPKPVA IKKALVFYAG 120 KAPKGEKTNW IMHEYRLADV DRSASSRKTN NNNSLRLDDW VLCRIYNKKG CIEKQNGSVV 180 KQETTQLNQG YDIDHDPDFN LVDNKTEVLP PSFSEYMLME SPSDSMPPPP PSTTSCSEQV 240 VSPVDLPCER EVQSEPKSKW KTTGVEKALE FPLSYMDMSM ENAFSVHGGN QMSPLQDMFL 300 FLQRPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-81	10	174	12	174	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015575373.1	1e-132	NAC domain-containing protein 2
Swissprot	Q39013	1e-122	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	B9S2X2	1e-130	B9S2X2_RICCO; NAC domain-containing protein, putative
STRING	XP_002520341.1	1e-131	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-118	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]