PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29676.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 920aa MW: 106080 Da PI: 8.5837

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29676.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.7	1.6e-07	42	136	5	90
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.......dgkwevtkle..leHnHela 90 e A++ GF ++k+++ ++ +r+ e + f+Cs++g+++ + ek +++ +++++C+ +++ +++ +w++++ + HnH+l+ Dca29676.1 42 EIAQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKAVYDP-EKPKKKPRTQKCDCRFRIRAVQNYhfvhnkrVLVWNIDTSDtfGCHNHALT 136 568999*99988765549999************9999888.777777777888888888754443344311144577776665568999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.2E-5	42	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.7E-25	251	346	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MSVAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQDNGFV LVKANNGSKN 60 RRQPELLASY FRCSRYGRSK AVYDPEKPKK KPRTQKCDCR FRIRAVQNYH FVHNKRVLVW 120 NIDTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK 180 PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHEANPLTLE LTHVFMSHPE 240 AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR 300 KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLIFKKEW 360 YKNHVLHNPE TGWYNVINST TEEEFKVAWN AFSTKWIQLA SYVSKTWGEH ASKFVLCYTN 420 EFFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MLEGQHSKIR KELEQSMSKP 480 RITHRMFSLL HGSVSIKAIE IMEEEIKRGD ALGVGLEQRC GCALRSTCGL PCSCELIRLR 540 DNSRRVHLGD IHVFWKTLVY DSNDAMPKND NDMLDELVEK ARKSDPAYRK IFIEKLRDIL 600 HPEDEDVKPP AVRDNPKGRP RGSTTRSKSS FEHSRNKYGT PSTDASTNVE HRICDFHAGE 660 VGAPLEKNYT IGVFSTWKKR FGVPECLWSF FDGWVDVGDD GHCGFRVISH AQRGQEEDYV 720 VMREWCVNEI TTHDIYKSLF NATYKLVDGF THYEQTLRRI GFYKKSSCGD DHWMCSDHLK 780 VFASMFNWTI CVIARQRMTK GDYVWQCSTI LPLRRSSARA HPYGVLWILN HNLHWMRLHC 840 KGPPREVPMP PIDPGWETFR DPSVAHLKSF YQTNFDNWHT IMGTTPRAPR SRSTTAHESQ 900 ASRKLEFERL NTGRQSTGET

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MSVAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQDNGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK AVYDPEKPKK KPRTQKCDCR FRIRAVQNYH FVHNKRVLVW  120
NIDTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK  180
PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHEANPLTLE LTHVFMSHPE  240
AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR  300
KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLIFKKEW  360
YKNHVLHNPE TGWYNVINST TEEEFKVAWN AFSTKWIQLA SYVSKTWGEH ASKFVLCYTN  420
EFFHLGNTAT SRVESAHSLL KAWLKSAHLT LDTMWSRIHS MLEGQHSKIR KELEQSMSKP  480
RITHRMFSLL HGSVSIKAIE IMEEEIKRGD ALGVGLEQRC GCALRSTCGL PCSCELIRLR  540
DNSRRVHLGD IHVFWKTLVY DSNDAMPKND NDMLDELVEK ARKSDPAYRK IFIEKLRDIL  600
HPEDEDVKPP AVRDNPKGRP RGSTTRSKSS FEHSRNKYGT PSTDASTNVE HRICDFHAGE  660
VGAPLEKNYT IGVFSTWKKR FGVPECLWSF FDGWVDVGDD GHCGFRVISH AQRGQEEDYV  720
VMREWCVNEI TTHDIYKSLF NATYKLVDGF THYEQTLRRI GFYKKSSCGD DHWMCSDHLK  780
VFASMFNWTI CVIARQRMTK GDYVWQCSTI LPLRRSSARA HPYGVLWILN HNLHWMRLHC  840
KGPPREVPMP PIDPGWETFR DPSVAHLKSF YQTNFDNWHT IMGTTPRAPR SRSTTAHESQ  900
ASRKLEFERL NTGRQSTGET

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	92	KPKKKPR
2	87	93	PKKKPRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5