PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29703.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 226aa MW: 24046.2 Da PI: 7.7672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29703.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.9	1e-44	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp++fanvhk+FGasnv kll++lp +reda++sl+yeAear+rdPvyG+vg+i+ lqq+l+q++++l ++k+ Dca29703.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQRFANVHKVFGASNVAKLLNELPAAQREDAVNSLAYEAEARLRDPVYGCVGLISVLQQKLKQVQSDLITAKK 105 7********************************************************************************************999988 PP DUF260 100 e 100 e Dca29703.1 106 E 106 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.21	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQRFANVH KVFGASNVAK LLNELPAAQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISVLQ QKLKQVQSDL ITAKKELATY IGPSALNATM 120 FPSPAYNVGA GGAGPSAVNA GVLGGYNMAN HMMGITTNTQ GASAAQQQSA QQMIEAQQQM 180 AAAVMKEEQE MMRNWEQQQQ FMRFNAGSSS GGGGFCGTYE VGGGAV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-53	4	110	8	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-53	4	110	8	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010687953.1	2e-86	PREDICTED: LOB domain-containing protein 36
Swissprot	Q9FKZ3	2e-69	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2R6R5R3	7e-84	A0A2R6R5R3_ACTCH; LOB domain-containing protein
STRING	XP_010687953.1	7e-86	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-69	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]