PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca29816.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 323aa    MW: 36229.6 Da    PI: 6.4056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca29816.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09239281855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  Dca29816.1 239 AAKNRRERISEKLKILQDLVPNG-----SKVDLVTMLEKAIGYVKFLQ 281
                 569*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-9230283No hitNo description
Gene3DG3DSA:4.10.280.107.0E-12231288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-12233289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-9237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6241281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MALVKDHHQS SSKSFYESML DVEFPHIPPY EFGDYDHQHQ DNEDGLESPN DSNKVINNHN  60
HQAISSSSSA NSSNNGYNNR EDDNSLINFN GNHGNHTSLL SNFHHDDRDS TEIFQKLSHQ  120
IDHHNYKLWE ASSSSSKNCG LNLQLLDEVS HLRSTSSDDY QGSPNEWFYN NNDANVVDPS  180
QESTTTTTST STQQRCFNKR SLMDEENTHA PKKQCITSAS KKSVKTKAAS KSKDPQSVAA  240
KNRRERISEK LKILQDLVPN GSKVDLVTML EKAIGYVKFL QLQMKVLATD EFWPVAGGKA  300
PDISQVKEAI DAILSSQRSK TSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693889.12e-95PREDICTED: putative transcription factor bHLH086
STRINGXP_010693889.17e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-47ROOT HAIR DEFECTIVE6