PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29904.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 328aa MW: 34812.1 Da PI: 5.9857

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29904.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.4	5.5e-22	251	314	1	64
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL++kv+ L +eN+aLk+el +l +e+ kl++e+e Dca29904.1 251 ERELKKQKRKQSNRESARRSRLRKQAECEELQRKVECLNSENSALKDELRNLADECMKLTAENE 314 89**********************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.0E-26	1	95	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	2.7E-16	249	310	No hit	No description
SMART	SM00338	1.2E-20	251	315	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.2E-20	251	313	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.702	253	316	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-11	254	310	No hit	No description
CDD	cd14702	2.71E-22	256	307	No hit	No description
PROSITE pattern	PS00036	0	258	273	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGAAEEQTPA KPAKSSSSAQ ETPTTMPPYA AEWSRSMQAY YNAAAAAPFY ASTVQSPAPH 60 PYMWSGQHPM MPPYGTPIHY PAMYPPGGVY GHPNIGTIAN TSGAAQADGK SLDVKDQSSG 120 KKSRGNSGVG NEKTTENGKA TSGSGNDGAS QSGESGSEDS SNSSDDNHNQ SSASKKGSFD 180 LMLEDGANAH NNVSNVGTVP GNPVPSPATN LNIGMDLWND NTPGAVNLRP STGVSSAVVP 240 SIVMGEICYD ERELKKQKRK QSNRESARRS RLRKQAECEE LQRKVECLNS ENSALKDELR 300 NLADECMKLT AENETIQAEL KRVGKNDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	273	RRSRLRK
2	267	274	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667696.1	1e-145	PREDICTED: G-box-binding factor 1
Swissprot	P42774	5e-88	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0J8B2I2	1e-143	A0A0J8B2I2_BETVU; Uncharacterized protein
STRING	XP_010667696.1	1e-144	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	3e-69	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]