PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca29997.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

WRKY

Protein Properties

Length: 354aa MW: 39215.1 Da PI: 7.531

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca29997.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.9e-30	183	241	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ Dca29997.1 183 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApTCPVKKKVQRSLEDQSMLVATYEGEHNHS 241 8*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-30	172	243	IPR003657	WRKY domain
PROSITE profile	PS50811	26.418	177	243	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-25	180	243	IPR003657	WRKY domain
SMART	SM00774	4.3E-35	182	242	IPR003657	WRKY domain
Pfam	PF03106	2.3E-24	183	240	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDYSSSWLMN SSNSSDRHHG RGGSTLSLFD DSPIQELDNK VVATRNWLNN ETEALVHELN 60 RVNGENKRLT EMLTVVCENY NELRKRLTDY MAKNNTTTYE VDNVTKKRKV DNNNVTVAIN 120 STNNNNNNNN NNNNNTTGRN NNVDSSSSDE EVSCGKHGEE AIQAKVSRVA VRTEASDSSL 180 ILKDGYQWRK YGQKVTRDNP CPRAYFKCSF APTCPVKKKV QRSLEDQSML VATYEGEHNH 240 SPPQQQESQS GSSRVITVGP VVPCNTTTLL GSSSSGPTVT LDLTKPEPNR SIETAKSWTA 300 NTLLPSQLNK FNSGEFQKLL AEHMASSLTK DPSFTSALAS AISGRFVQHS SNEL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDYSSSWLMN SSNSSDRHHG RGGSTLSLFD DSPIQELDNK VVATRNWLNN ETEALVHELN  60
RVNGENKRLT EMLTVVCENY NELRKRLTDY MAKNNTTTYE VDNVTKKRKV DNNNVTVAIN  120
STNNNNNNNN NNNNNTTGRN NNVDSSSSDE EVSCGKHGEE AIQAKVSRVA VRTEASDSSL  180
ILKDGYQWRK YGQKVTRDNP CPRAYFKCSF APTCPVKKKV QRSLEDQSML VATYEGEHNH  240
SPPQQQESQS GSSRVITVGP VVPCNTTTLL GSSSSGPTVT LDLTKPEPNR SIETAKSWTA  300
NTLLPSQLNK FNSGEFQKLL AEHMASSLTK DPSFTSALAS AISGRFVQHS SNEL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-20	167	243	1	74	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691587.1	1e-113	PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBL	Q76LA9	1e-110	Q76LA9_SPIOL; WRKY transcription factor 1
STRING	XP_010691587.1	1e-112	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	3e-72	WRKY DNA-binding protein 40