PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30031.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 330aa    MW: 36678.9 Da    PI: 7.1282
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30031.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.52.8e-16207243135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg ++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  Dca30031.1 207 CQHCGISEksTPAMRRGPDGPRTLCNACGLMWANKGT 243
                 *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-671106IPR010399Tify domain
PROSITE profilePS5132012.42471106IPR010399Tify domain
PfamPF062001.6E-975105IPR010399Tify domain
PROSITE profilePS5101712.858138180IPR010402CCT domain
PfamPF062035.7E-16138179IPR010402CCT domain
SMARTSM004011.6E-13201254IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.552201257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-12203258No hitNo description
Gene3DG3DSA:3.30.50.107.4E-15205248IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.16E-14207259No hitNo description
PROSITE patternPS003440207234IPR000679Zinc finger, GATA-type
PfamPF003204.0E-14207243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDVANGRRNR DDDRHRRNHH QHAVVDDMNF DADYASDDDY AAVDDVNASS ARVSIAVPGG  60
VNKPRVSASS TSRRASELTI AFEGEVYVFP AVTPDKVQAI LVLLGGCETS TSVPSSEFLQ  120
QHKMTLDDPT SDEKVSQRIA SLVRFREKRK ERCFDKKIRY TCRKDVAEKM QRKNGQFIAV  180
SDRYKVPASN WDPNNGTPPP ESVPRNCQHC GISEKSTPAM RRGPDGPRTL CNACGLMWAN  240
KGTLRDLTRP VRNIPFQNTP STPGDIKPFR MMVQGHNIGQ DMQGSPEDVK PATSDSGKTL  300
TRETEQDLED DEEVTNCPVV SLRNTSVNTT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691384.11e-138PREDICTED: GATA transcription factor 19-like
SwissprotQ8GXL76e-58GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0K9RKP21e-129A0A0K9RKP2_SPIOL; Uncharacterized protein
STRINGXP_010691384.11e-138(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-60ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]