PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30120.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 280aa    MW: 31550.6 Da    PI: 9.8602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30120.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-1393144354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h e+ErrRR+riN+ +++Lr  +P++  +++ K++Ka+ L ++++ +k+L
  Dca30120.1  93 KSHCEAERRRRERINNHLANLRNFVPTSATTHNNKMDKATLLAEVIRQVKDL 144
                 58*************************559****************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.51990144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-1193144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1394150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1394147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-1196150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2606.6E-6185232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSSMGMSFDA MTQGFFDFES FNTPENMEVF WSTTSKGDNI GESLGLFNNN DFNNEFIVKG  60
LNNNNNNNSN NNNKTSNKRK TMSSETKNVA ALKSHCEAER RRRERINNHL ANLRNFVPTS  120
ATTHNNKMDK ATLLAEVIRQ VKDLKNQALE ATKGLLIPTD ADEVIVVPYD DKNSSNDDVF  180
VFKASVCSEY KPEIIPTLRR VIKELKLNIV KAEISTLGGR VKNVFTISGK RDEIGCGKRE  240
KFAKSIHKAM SSALEKISSL EEYSPRAIYP SKRRRVAHSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103ERRRRE
2271275KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686302.16e-70PREDICTED: transcription factor bHLH30
RefseqXP_010686303.16e-70PREDICTED: transcription factor bHLH30
RefseqXP_010686305.16e-70PREDICTED: transcription factor bHLH30
RefseqXP_010686306.16e-70PREDICTED: transcription factor bHLH30
RefseqXP_019106643.16e-70PREDICTED: transcription factor bHLH30
TrEMBLA0A061GLQ33e-58A0A061GLQ3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 2
STRINGXP_010686302.12e-69(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-32bHLH family protein