PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30125.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 192aa    MW: 22392.1 Da    PI: 9.1374
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30125.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1241.3e-0746112573
        FAR1   5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekd 73 
                 e A++ GF  +k+++ ++ +r+ e   + f+Cs++g++++  +    e+ +++  + +C+++++++  ++
  Dca30125.1  46 EIAQDNGFVWVKANNGSKnRRQPELLASYFRCSRYGRSKTVYDP---EKPNKKPRKQKCDCQFRIRAVQN 112
                 568999**998887755439999**************9998877...45555555556666666655543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-546114IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSHVWTNVQV KDSFENLGGD NVDYNHLFVT EVCFEDRDKA FDWANEIAQD NGFVWVKANN  60
GSKNRRQPEL LASYFRCSRY GRSKTVYDPE KPNKKPRKQK CDCQFRIRAV QNYHFVHNKR  120
VLVWNIDTLD TFGCHNNALT KYKDGQRGYA GLDEDEKAFV REQYSNAVLP RDIKTGLHLK  180
SPDKPQPSSK QI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-