PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30201.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 327aa    MW: 35005.9 Da    PI: 7.6444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30201.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30138196259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D+++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver++++pk++++tY++eHnh+
  Dca30201.1 138 SDKWAWRKYGQKPIKGSPHPRGYYRCSSSkGCLARKQVERNRSNPKMFIVTYTSEHNHP 196
                 79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30132198IPR003657WRKY domain
PROSITE profilePS5081134.337132198IPR003657WRKY domain
SuperFamilySSF1182902.22E-26135198IPR003657WRKY domain
SMARTSM007744.9E-37137197IPR003657WRKY domain
PfamPF031066.3E-26139196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDAPLPPPPD WDLLAVVRSC SSTTTATTTA TPSSTLPPPL PPTPPPTCSS NSTVFGFCRP  60
GGQQQEELLD VCTSGFQSST VSFSFAQQLR PVVKPSQVIF GASTTSTTTG VTSQTHRSKK  120
RKSLMKKVCH VPAEGLSSDK WAWRKYGQKP IKGSPHPRGY YRCSSSKGCL ARKQVERNRS  180
NPKMFIVTYT SEHNHPMPTH RNSLAGSTRH KPLTSTTTLP EQPTCSSPSV ASLSPLTNVS  240
ESTTKCGGDN NLMKDEDGNN DMGGLSDLMF DDDFYVGFEQ IDGGGGGDCG SDDSDCFSEQ  300
FSPSSEFPWL LNGSTTVATA TTAASRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-20122199280Disease resistance protein RRS1
5w3x_D1e-20122199280Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767146.11e-103WRKY transcription factor 22-like
TrEMBLA0A0K9RJ461e-97A0A0K9RJ46_SPIOL; Uncharacterized protein
STRINGXP_010669828.17e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-65WRKY family protein