PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30355.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 297aa    MW: 33378.2 Da    PI: 5.1185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30355.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12115164155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++++h ++Er+RR+++ ++f  L  l+P +     kK++K ++L +A+e++k+L+
  Dca30355.1 115 QCQNHIIAERQRRQNLSQRFIALSALIPGL-----KKMDKTSVLGEAIEHMKQLK 164
                 689***************************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.16E-11114168No hitNo description
PROSITE profilePS5088815.37114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10115163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16117182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16118176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKYRCQEDAD DTMLMQELVG DYLVDYPTED IDALMDNHEL NYTLSGGSEC NSSTAAGEKS  60
NNNKGPKRQK FSPSSPNNNN SHCNAAESNQ NQSDVSNEPE PKPKPTKRPR RLPDQCQNHI  120
IAERQRRQNL SQRFIALSAL IPGLKKMDKT SVLGEAIEHM KQLKERVAVL EDENARRAVE  180
SVVVIQRSRV ILENESNSST SNDSHSTGIT DVEQEQLPEV EARFSNKSVL IRIHSTAQSG  240
ILSKIISQIE RLNLTVTNTS SMPFNNTVDI TVMTQMERDF DMMPQEIVAN LRSIFDA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106053.19e-81PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0722e-53BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2I4EDT92e-55A0A2I4EDT9_JUGRE; transcription factor bHLH18-like isoform X2
STRINGXP_010683071.14e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-52bHLH family protein