PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30668.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 172aa MW: 19671.2 Da PI: 5.3779

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30668.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.9	1.2e-46	5	119	1	117
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL kkv++ ++ +++++vd++k+ePwdLp+k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ +g l Dca30668.1 5 LPPGFRFHPTDEELITFYLSKKVSDFGFTS-KAMADVDLNKCEPWDLPAKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-GGIL 101 79***********************999.88***********999999************************************. PP NAM 100 vglkktLvfykgrapkge 117 +g+kktLvfy+grapkg+ Dca30668.1 102 IGMKKTLVFYRGRAPKGQ 119 **************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-49	3	119	IPR003441	NAC domain
PROSITE profile	PS51005	42.948	5	154	IPR003441	NAC domain
Pfam	PF02365	5.1E-22	6	114	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MEEKLPPGFR FHPTDEELIT FYLSKKVSDF GFTSKAMADV DLNKCEPWDL PAKASMGEKE 60 WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIFRGGI LIGMKKTLVF YRGRAPKGQG 120 LLPPLGTELG SDFPSSSTEK AVDDQPMLSQ SEQQNPEQQQ FQEQPFNLDS IW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-43	5	118	20	133	NAC domain-containing protein 19
3swm_B	3e-43	5	118	20	133	NAC domain-containing protein 19
3swm_C	3e-43	5	118	20	133	NAC domain-containing protein 19
3swm_D	3e-43	5	118	20	133	NAC domain-containing protein 19
3swp_A	3e-43	5	118	20	133	NAC domain-containing protein 19
3swp_B	3e-43	5	118	20	133	NAC domain-containing protein 19
3swp_C	3e-43	5	118	20	133	NAC domain-containing protein 19
3swp_D	3e-43	5	118	20	133	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678450.1	1e-80	PREDICTED: protein CUP-SHAPED COTYLEDON 1
Swissprot	Q9FLR3	9e-66	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A1J6IDZ9	9e-77	A0A1J6IDZ9_NICAT; Nac domain-containing protein 79
TrEMBL	A0A1S4B9J5	6e-77	A0A1S4B9J5_TOBAC; NAC domain-containing protein 100-like
TrEMBL	T2CBI0	1e-76	T2CBI0_9CARY; Putative NAC domain class transcription factor
STRING	XP_010678450.1	5e-80	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	5e-78	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]