PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30837.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 436aa MW: 50494.3 Da PI: 8.3708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30837.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.5	5.3e-14	16	109	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ GF +rk + k+ r+g+ +++ vC++ g+ +k+ e+ r +++ ++gCka++++ +gk+ v+++ +eHnHel Dca30837.1 16 NFYNIYGIGSGFGTRKYTAKHW-RDGTLKSKLIVCNRVGSYYAKKNPskeddsVETIGRITSVLNVGCKARIRLFCL-NGKFTVDEFTEEHNHELL 109 6**************99988.8888********87776666555555555556788889*****998.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-11	16	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-30	231	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MPYVGQEFVS VEEAANFYNI YGIGSGFGTR KYTAKHWRDG TLKSKLIVCN RVGSYYAKKN 60 PSKEDDSVET IGRITSVLNV GCKARIRLFC LNGKFTVDEF TEEHNHELLS VQEREFKKLA 120 SNLTDYHKNF IVSNIRLKIG ATKTYRMIKE HVNGFSNVGA TLNQFKNFQR DLKCFIHEKD 180 GQLFIDRFKS MAENRSGFFF DYDVDADGSL RRAIWADAEA IRNYEVFGDA LSFDPTYSTN 240 KYSMIFTPFT GVDNHKSTIT FSGALIANED YESFKWVFDR FLKAMGGKEP EYIITDQDPA 300 IIKSVGHIFK RSRHRFCMWH IMNKVPLKFG GTSSDLTEFV RKLNGIIWDA EIGAADFDCR 360 WLEIMNEHGV GKGDWFEECF SIRRQWIMAQ CRDLRMGSLL RTTQRSESSN SFFKKFEHKS 420 GTLVEFWLRF ESAIEQ

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MPYVGQEFVS VEEAANFYNI YGIGSGFGTR KYTAKHWRDG TLKSKLIVCN RVGSYYAKKN  60
PSKEDDSVET IGRITSVLNV GCKARIRLFC LNGKFTVDEF TEEHNHELLS VQEREFKKLA  120
SNLTDYHKNF IVSNIRLKIG ATKTYRMIKE HVNGFSNVGA TLNQFKNFQR DLKCFIHEKD  180
GQLFIDRFKS MAENRSGFFF DYDVDADGSL RRAIWADAEA IRNYEVFGDA LSFDPTYSTN  240
KYSMIFTPFT GVDNHKSTIT FSGALIANED YESFKWVFDR FLKAMGGKEP EYIITDQDPA  300
IIKSVGHIFK RSRHRFCMWH IMNKVPLKFG GTSSDLTEFV RKLNGIIWDA EIGAADFDCR  360
WLEIMNEHGV GKGDWFEECF SIRRQWIMAQ CRDLRMGSLL RTTQRSESSN SFFKKFEHKS  420
GTLVEFWLRF ESAIEQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-57	FAR1-related sequence 5