PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca30871.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 396aa    MW: 45918.7 Da    PI: 6.8229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca30871.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.81.2e-1926115199
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ffk++  + +++++ l++p++f+e+++   + s  +tl  +s ++W+v+l  +++ + ++l++GW+ Fv ++g++  Df+vF+++g+++f   v vf++
  Dca30871.1  26 FFKIM--PRNFENQ-LRIPRHFVENFQC--RLSGSVTLIGPSRNEWKVQL--ERREEDVWLSSGWEAFVIDHGVDLHDFLVFTYVGDTTF--EVAVFSA 115
                 78888..7777765.********88864..46678***************..*********************************98888..8888765 PP
2B340.83.9e-13285366889
                 -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
          B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  +v +   l++pk+ a ++++ k  +++l+++  ++  W v +++ r++  ++ ++  W eFv +n+L+egD +vF+++++ +
  Dca30871.1 285 THVYRGLYLTIPKEWAVQNMSRKDHEVELRVNG-TNDFWLVGCRWtRNGAVQCQFRPRWAEFVLDNNLEEGDACVFEMIQKGN 366
                 566666779**********98888877777555.7799*******66666669************************987533 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.14223116IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-2323118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-1824114No hitNo description
SuperFamilySSF1019365.49E-2325118IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1626116IPR003340B3 DNA binding domain
PfamPF023621.5E-1626114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-14271381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-15272381IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.897278383IPR003340B3 DNA binding domain
SMARTSM010191.8E-5279383IPR003340B3 DNA binding domain
CDDcd100176.27E-12281381No hitNo description
PfamPF023627.0E-11282366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MADICRTCKA KAKCEYWHKR SVTKKFFKIM PRNFENQLRI PRHFVENFQC RLSGSVTLIG  60
PSRNEWKVQL ERREEDVWLS SGWEAFVIDH GVDLHDFLVF TYVGDTTFEV AVFSATGCER  120
ESSHFTRVDS ENSLCRCTLH VEGNAYVMED VSSDFELGET EVNFPQASAK ESHKTKAEAS  180
HYNAVYKGKR KLGSLPRSDQ SVESDNDFED EDEEEEEEEE GAEGSFSCSR HPSTFDRKQT  240
QKCHISRRRR VTEKEKQRAC DLSTKFINRS KSSGIPMVGL IMLRTHVYRG LYLTIPKEWA  300
VQNMSRKDHE VELRVNGTND FWLVGCRWTR NGAVQCQFRP RWAEFVLDNN LEEGDACVFE  360
MIQKGNTQAN TRPVFLVHIF RVVQEVVPLT PKRMVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-27B3 family protein