PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca30941.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 167aa MW: 18936.6 Da PI: 10.1236

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca30941.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+v+yLk+k+++++l++ ++i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+ +++ Dca30941.1 15 LPPGFRFHPTDEELIVHYLKRKASSSPLPV-SIIADVDLYKFDPWELPSKAIFGENEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILACnGNQ 112 79**************************.89***********7777799*********************************9875677 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ p+g+ktdW+mhe+rl Dca30941.1 113 RVGVKKALVFYGGKPPRGVKTDWIMHEFRL 142 7*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-61	9	149	IPR003441	NAC domain
PROSITE profile	PS51005	57.784	15	167	IPR003441	NAC domain
Pfam	PF02365	5.4E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MESTDSSSTP SYPQLPPGFR FHPTDEELIV HYLKRKASSS PLPVSIIADV DLYKFDPWEL 60 PSKAIFGENE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILACNG NQRVGVKKAL 120 VFYGGKPPRG VKTDWIMHEF RLMDTHHASK RPLSFVAHPK KASLRVC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-66	15	144	17	144	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-66	15	144	17	144	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-66	15	144	17	144	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-66	15	144	17	144	NO APICAL MERISTEM PROTEIN
3swm_A	4e-66	15	144	20	147	NAC domain-containing protein 19
3swm_B	4e-66	15	144	20	147	NAC domain-containing protein 19
3swm_C	4e-66	15	144	20	147	NAC domain-containing protein 19
3swm_D	4e-66	15	144	20	147	NAC domain-containing protein 19
3swp_A	4e-66	15	144	20	147	NAC domain-containing protein 19
3swp_B	4e-66	15	144	20	147	NAC domain-containing protein 19
3swp_C	4e-66	15	144	20	147	NAC domain-containing protein 19
3swp_D	4e-66	15	144	20	147	NAC domain-containing protein 19
3ulx_A	4e-66	14	142	14	140	Stress-induced transcription factor NAC1
4dul_A	4e-66	15	144	17	144	NAC domain-containing protein 19
4dul_B	4e-66	15	144	17	144	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010686575.1	1e-102	PREDICTED: NAC transcription factor 25
Swissprot	Q8GY42	1e-84	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A0K9QEW3	4e-98	A0A0K9QEW3_SPIOL; Uncharacterized protein
STRING	XP_010686575.1	1e-101	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	5e-87	NAC domain containing protein 25