PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31014.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 241aa    MW: 28133.6 Da    PI: 9.4053
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31014.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.61.7e-0746136990
        FAR1   9 evGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgkwevtkle.......leHnHela 90 
                 + GF ++k+++ ++ +r+ e   + f+Cs++g+++   ++ e+ +++ ++++++C+ +++  +++    +++ ++   +         HnH+l+
  Dca31014.1  46 DNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDT-ENPKKKLKTQKCDCRFRIRAVQNYhfinNKRVVLC--NivtletfGYHNHALT 136
                 6799999888755449999**************9998877.66666666666666666654444445422222222..2335556667888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSDAESVDSF ENLGGDNVDY NYLFVTEVCF EDRDKAFDWA NEIVRDNGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK GVYDTENPKK KLKTQKCDCR FRIRAVQNYH FINNKRVVLC  120
NIVTLETFGY HNHALTKYKN GHRGYAGLDE DEKAFVRKEY SSAVLPRDIK TGLHQKSPDK  180
PQPSSKQIYN VTSKIRRELK GDQNPEQQML ALAVEANYVH WHETNPECRR RRSVTTWFFV  240
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793PKKKLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-