PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca31157.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 503aa MW: 57417.9 Da PI: 6.5158

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca31157.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.1	5.9e-08	91	184	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YA + GF+v ++++ + e+ ++ ++ gk+e++ + + ++r+++++ t+Cka ++ + d+ +++++++leHnHel Dca31157.1 91 FIISYALKKGFEVFTRSNALK---AEFRNAGVIRKCGGKKESRYHMmerlclackKGGRKRSEKSNVTSCKAYFEGAIQ-DDGFVIKTVHLEHNHELD 184 5568*******99988777...344455555555566666555577899999877888899999*****9999.999***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-6	91	185	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.7E-32	305	398	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MSSNNDGWFD LNEYYDEEFG GSGGYVEEIE ENDTELNNNE SAGNSIDEVV LADGSPNPVE 60 PSGNAVEGAN DDIGDPTVGM VFPNCDSFAE FIISYALKKG FEVFTRSNAL KAEFRNAGVI 120 RKCGGKKESR YHMMERLCLA CKKGGRKRSE KSNVTSCKAY FEGAIQDDGF VIKTVHLEHN 180 HELDPGNSRF KVSARTITDY FKERIVLNDR AGIPITKNFN AMVIEAGGHE NLPFNHRDLR 240 NLVNLERRLK RINGDAAALE QYFVKMKTDN PDFFYAIKKD NEGRLQNVFW ADARCRAMFK 300 VFGDVVTYDT TFLCNRYRLP FSPFIGVNHN GNSICFAAAL ITNENTETFI WVFERWLECM 360 GKAPPVILSD QDKAIGKAIE TVFPGSKHRL CLWHMMRNAV KNLGRYGFWK ELCSDLKAVV 420 HDTLSEEDFE QGWKVMVEKF GLQENAWIKE SYNIRRRWVP AYWKGTFCAG MSSTQRSEQS 480 NRFFKVRVSL ETGLRNFMTQ FDL

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MSSNNDGWFD LNEYYDEEFG GSGGYVEEIE ENDTELNNNE SAGNSIDEVV LADGSPNPVE  60
PSGNAVEGAN DDIGDPTVGM VFPNCDSFAE FIISYALKKG FEVFTRSNAL KAEFRNAGVI  120
RKCGGKKESR YHMMERLCLA CKKGGRKRSE KSNVTSCKAY FEGAIQDDGF VIKTVHLEHN  180
HELDPGNSRF KVSARTITDY FKERIVLNDR AGIPITKNFN AMVIEAGGHE NLPFNHRDLR  240
NLVNLERRLK RINGDAAALE QYFVKMKTDN PDFFYAIKKD NEGRLQNVFW ADARCRAMFK  300
VFGDVVTYDT TFLCNRYRLP FSPFIGVNHN GNSICFAAAL ITNENTETFI WVFERWLECM  360
GKAPPVILSD QDKAIGKAIE TVFPGSKHRL CLWHMMRNAV KNLGRYGFWK ELCSDLKAVV  420
HDTLSEEDFE QGWKVMVEKF GLQENAWIKE SYNIRRRWVP AYWKGTFCAG MSSTQRSEQS  480
NRFFKVRVSL ETGLRNFMTQ FDL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853860.1	1e-152	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-76	FAR1-related sequence 5