PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca31184.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 126aa MW: 14734.1 Da PI: 9.8959

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca31184.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	67.4	2.1e-21	31	115	8	97
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++s+ l++p +f+ e +gk +k+++l++++g++W+ k + k +r+++t GWke++k++ L gDf+vFk ++s f +v vf Dca31184.1 31 LPDFNSHKLMIPPQFIIEQyKGK--IPKEIKLRNKNGKTWRTKT--QVKNQRVFITHGWKEYAKDHSLVRGDFMVFKQLKESLF--FVDVF 115 56778889*****76665666..7889***********..999999***********************5554555..77776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	8.7E-23	20	117	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-22	21	118	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.001	24	118	IPR003340	B3 DNA binding domain
CDD	cd10017	2.43E-16	26	115	No hit	No description
SMART	SM01019	5.6E-18	26	118	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.7E-19	28	115	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MKIVEMEGVD DSSFESEVAK KTNAAFFTIY LPDFNSHKLM IPPQFIIEQY KGKIPKEIKL 60 RNKNGKTWRT KTQVKNQRVF ITHGWKEYAK DHSLVRGDFM VFKQLKESLF FVDVFGVDGT 120 LKDEPL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-20	B3 family protein