PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31222.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 187aa    MW: 21280.6 Da    PI: 6.6984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31222.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-291777259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                +Dg++WrKYGqK++ +s++prsYYrCt++   +Cp+kk+v+r ++dp ++ei Y+g+H+++
  Dca31222.1 17 EDGFTWRKYGQKDILNSKYPRSYYRCTHQklyNCPAKKQVQRLDDDPFTFEILYRGDHTCH 77
                7****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-281477IPR003657WRKY domain
SuperFamilySSF1182903.14E-261578IPR003657WRKY domain
SMARTSM007742.6E-381678IPR003657WRKY domain
PfamPF031061.1E-261777IPR003657WRKY domain
PROSITE profilePS5081119.4741779IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVRVGAPQIG NLEMPPEDGF TWRKYGQKDI LNSKYPRSYY RCTHQKLYNC PAKKQVQRLD  60
DDPFTFEILY RGDHTCHLSS TAPTTPQSHA AQPTLFSQAQ HHHHQWPQLS MDFHAPPPED  120
AHTTVFNPHD SSAVVGSGLF LHQHNSLLDL ADVMFNSGSS TCSNNMDVIF SSMVEDNNKW  180
KNNDLKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-201776968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520832.12e-55WRKY transcription factor 55 isoform X1
RefseqXP_022146859.12e-55WRKY transcription factor 55
TrEMBLB9S4B35e-54B9S4B3_RICCO; WRKY transcription factor, putative
STRINGXP_002520832.18e-55(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-44WRKY DNA-binding protein 55