PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31339.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 585aa    MW: 64204.9 Da    PI: 7.7016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31339.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.1e-17234333198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sdv+ +grlvlpk +ae++  + +k+e++ +++ d + ++W ++++y+ + ++  yvl+ G  +  ++ ++k+gD+v+F  ++  +++lv++
  Dca31339.1 234 FEKVLSASDVSPLGRLVLPKACAEAYfpSASKPEGFPIKVLDVNRKEWGFQFRYWPNTSGriYVLE-GVAQCLQSMHVKAGDTVTFCCTE-PDGKLVMS 330
                 99**************************77778999******************655555567777.********************654.78877777 PP

                 EE- CS
          B3  96 vfr 98 
                 +++
  Dca31339.1 331 FRK 333
                 765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576117No hitNo description
SuperFamilySSF1019367.32E-19231334IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-25231336IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-22232333No hitNo description
PfamPF023621.9E-14234332IPR003340B3 DNA binding domain
PROSITE profilePS508639.53234335IPR003340B3 DNA binding domain
SMARTSM010192.7E-16234335IPR003340B3 DNA binding domain
PROSITE profilePS5105013.928465515IPR011124Zinc finger, CW-type
PfamPF074964.4E-11470512IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAAKKCLNIH YCGTTSCAQW KTGWRLRSGE LANLCDKCGY AFEQRVFCEE FHNDESGWRN  60
CVTCGKRLHC GCIASLHLIT LVPNGVKCSD DCADNSVPAE NAALGLMNRE SSILPVAETE  120
AQLNQAITSG VSSGNLQLTP ATVTDEREQG NMSAALNQDS ASLTPTSTPP TRPSALPSNE  180
FLSMRTQLCL ARCSGQGRGG QARHQLFSRY WPRLTHQEVQ QICGPTNSTV IPLFEKVLSA  240
SDVSPLGRLV LPKACAEAYF PSASKPEGFP IKVLDVNRKE WGFQFRYWPN TSGRIYVLEG  300
VAQCLQSMHV KAGDTVTFCC TEPDGKLVMS FRKPSDSSAQ TTMGSADAPT NALPGQSAST  360
AINHDVHSIE QSRGPPKAAL LCLPVVKTRS QKARDIEAKS NEKLPPVYTQ QHAQALKLTL  420
EEVQGMLCPP PNAKPNIVVA EGFKIEEYKD PAVLRKRSIF ATRLLGETEQ WAQCDNCSKW  480
RRLPFDFLLP PKWKCADNSW DPARWFCSAP EELSPEDRED LIKLSNGFKK KKMRMVAKVM  540
QETENSVINS FVDAVNLGDD PTNEAGTSAV ATSSKVQNKE AADKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-492123382128B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766999.11e-174B3 domain-containing transcription repressor VAL2-like
STRINGXP_010683488.11e-167(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-105HSI2-like 1