PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31467.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 275aa    MW: 31472.3 Da    PI: 9.1635
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31467.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.73.8e-1849132190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fY++YA+++GF++r++ +k++  +g    +t vC+keg+ + + k      ++r++tr gCka+   k+ ++g+++v+k+++ HnH+++
  Dca31467.1  49 QFYSSYATTCGFTIRREGEKRN-AKGLPSYKTCVCNKEGEGKATGKM-----KKREVTRQGCKACACFKMIENGEYMVYKFVEAHNHPMM 132
                 6****************99998.7777999**********9998887.....99*********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-1449132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQLLIFKLPA AANSPESTAT TSCDGVPYCR DELKPVVGKT FASLEQGIQF YSSYATTCGF  60
TIRREGEKRN AKGLPSYKTC VCNKEGEGKA TGKMKKREVT RQGCKACACF KMIENGEYMV  120
YKFVEAHNHP MMTPTTMVHL KSGRELNVVH KKMIIDNSRV NHGPVKTFRM FKEYVKGYNN  180
IGASLQDFKN FSRDVKRFLK EYDAQMIIET FIQKRAMCPS FYFDFDVDED QKLTKLFWAD  240
PISIKNYALY GDSCSFDTTF DFNKYKMVFA PFTGV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668319.12e-85PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010668319.19e-85(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-37FAR1-related sequence 5