PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31471.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35780.6 Da    PI: 4.6949
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31471.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-1954107356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Dca31471.1  54 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 107
                 456899***********************************************9 PP
2HD-ZIP_I/II127.65.2e-4153145193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk+++d+lk++ e L++++++L +e+ke
   Dca31471.1  53 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANFDNLKQNFELLQQDKDSLLKEIKE 145
                  69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2030111IPR009057Homeodomain-like
PROSITE profilePS5007117.60549109IPR001356Homeobox domain
SMARTSM003897.5E-1852113IPR001356Homeobox domain
PfamPF000465.1E-1654107IPR001356Homeobox domain
CDDcd000862.33E-1754110No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2056115IPR009057Homeodomain-like
PRINTSPR000319.0E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000319.0E-689105IPR000047Helix-turn-helix motif
PfamPF021832.3E-15109150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKRLRSSDSV GALISMCPSS EEHSPSSGNL MYQSVLDGID EDGCLEESGH MMEKKRRLSV  60
EQVKALEKNF EVENKLEPER KVKLAQELGL QPRQVAVWFQ NRRARWKTKQ LERDYGILKA  120
NFDNLKQNFE LLQQDKDSLL KEIKELNSKL NEENTESNMC VKEEATAKAV EPITPNGVLE  180
DAKALSTDKG VLDFKDGSSE SDSSAIVNEG NNSPNASDSS CGGGFTQNQQ QPLLMCSNSP  240
SLTLNCSSSS PSSINCFSFT EYRPGCTETT HNLDKNVYHH SSQYVKLEEH NFFSGEEACN  300
FFSDEPAPTL HWYTPDQWA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725422.11e-131homeobox-leucine zipper protein ATHB-16-like
RefseqXP_021758602.11e-131homeobox-leucine zipper protein ATHB-16-like isoform X1
TrEMBLQ6F6B71e-130Q6F6B7_SILLA; SlHDL1
STRINGXP_010681015.11e-124(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-75homeobox protein 16