PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31681.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 352aa    MW: 39029.1 Da    PI: 5.9881
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31681.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.41.2e-27130190259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK++ g+++prsYYrCt++   gC++ k+v+r++edp++++i+Y+g+H+++
  Dca31681.1 130 NDGHSWRKYGQKDILGAKYPRSYYRCTYRtyqGCCAIKQVQRNDEDPSLFDIVYKGTHTCT 190
                 7**************************988889**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-27121190IPR003657WRKY domain
SuperFamilySSF1182903.66E-24128190IPR003657WRKY domain
SMARTSM007741.4E-36129191IPR003657WRKY domain
PROSITE profilePS5081121.138130187IPR003657WRKY domain
PfamPF031068.7E-26130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDPRGGSSYE QDSLVSELMH GMELAQQLKA NMGTQGTEML AEKIRSSFEK ALLILKWSGS  60
MGQSNHLVVP TSTIPASPIS VVGSPKSDDF NQGLADQQDV KDFSKKRKKL PSWTDQVKVS  120
TESGIEGPPN DGHSWRKYGQ KDILGAKYPR SYYRCTYRTY QGCCAIKQVQ RNDEDPSLFD  180
IVYKGTHTCT PRSKSAPTSP EKQQYNKQQT PSTVYQEQSN MLLNFQTGLS IDIHNLENQE  240
LEHPFPTSGS VYENHTFTPT TNDNYCSSFT PTFTISPATS TSNYFSTSPC NISSFGGVHH  300
GQHSGSDFTD IFSATTSGAN SPIMGLDFPL ELMEFNPSFS YDNQAYPYPP SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-17130189968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676319.11e-148PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0K9RJ401e-145A0A0K9RJ40_SPIOL; Uncharacterized protein
STRINGXP_010676319.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-59WRKY family protein