PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca31798.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 246aa    MW: 28025.8 Da    PI: 4.6684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca31798.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-1293139455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 ++ e+Er+RR+++ + ++ Lr+l+P+ +      Kl+Ka+i   A+ YI +Lq
  Dca31798.1  93 KNFEAERKRREKLTEQLFILRSLVPNiS------KLDKASIIGDAITYIEELQ 139
                 5789**********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.28189138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1691152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.85E-1191143No hitNo description
PfamPF000104.3E-1093139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1395144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-1496150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSNSINNNHS FSMNMNIIIT ELQSDAPISD INDQSQAALP TLAPAFETLN ISSDSTNNNQ  60
SMSVIEQSEN GVHQTQDKQK VDQLDDNDEP QSKNFEAERK RREKLTEQLF ILRSLVPNIS  120
KLDKASIIGD AITYIEELQK EARDLQDELE RNFDDEYTSH SIMTDHHQSF STEISNVQVE  180
VGQLERNNFY VKVFGEQERG GKETAKMFPQ STYGTHCSRQ REATKLGFGQ RCAIVGNWYR  240
SRTPVN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102ERKRRE
298103RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-28bHLH family protein