PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 512aa    MW: 56620.9 Da    PI: 9.5129
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.6e-1145895399
             EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
       B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
             +++++r++lt+GW+ Fv +++L +gD +vF   +r+++ l+v+v+r+
  Dca32.1 45 QGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RRENGGLRVGVRRR 89
             678999*************************..5688889*****97 PP
2Auxin_resp81.42e-271602222083
  Auxin_resp  20 stseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  +s+F+v v+k+++a+k+ +svGmRf m+fe++d++err++Gt+vgv+d+ p +Wp+SkWrsLk
     Dca32.1 160 RSSQFIVGVNKYLAAVKHAFSVGMRFNMRFEGDDCPERRFAGTIVGVEDACP-QWPRSKWRSLK 222
                 479**********************************************999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.1643290IPR003340B3 DNA binding domain
PfamPF023621.1E-84589IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1146117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-1646103IPR015300DNA-binding pseudobarrel domain
PfamPF065074.0E-24159222IPR010525Auxin response factor
PfamPF023097.5E-7383432IPR033389AUX/IAA domain
SuperFamilySSF542777.95E-12392472No hitNo description
PROSITE profilePS5174524.865396477IPR000270PB1 domain
PfamPF023093.6E-6437475IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MDNQGGGGGG GYGGGGGGGN GGGRDELYEE LWRACAGFMV EIPQQGQPRR HLLTTGWSTF  60
VTSKRLVAGD AFVFLRRENG GLRVGVRRRA RQQSPMPSSV ISSQSMHLGV LATARHAVNT  120
CTMFVVYYKP RFGALRAVSY VEFVTKPKHR LNIYDFFYSR SSQFIVGVNK YLAAVKHAFS  180
VGMRFNMRFE GDDCPERRFA GTIVGVEDAC PQWPRSKWRS LKVQWDEAAA IRRPDCVSPW  240
EIEPLPSSVP ANRSTLLALS KTKRSRPSDQ AFSETTGNSV ISNFWTHTNG YCSPRNESDN  300
VIWTPTQLPN TTPSSNASLV PSRVEVESEK VEKAVSKKVG SCRLFGIELR NNNSLSSDKT  360
SEFSGFKAVD EGKNEKVDPS KDEKQVALVS SHSSARSRTK VQMQGVAVGR AVDLATLAGY  420
NELILELEKM FDLKDELKTR AKWAVVFTDD EGDRMLVGDD PWPEFCKMVR KIYISANVDV  480
KNMNTKSKLA SSSTDEGTAI SVQTDLKSES RD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-7145247181357Auxin response factor 1
4ldw_A2e-7145247181357Auxin response factor 1
4ldw_B2e-7145247181357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021748876.10.0auxin response factor 18-like
RefseqXP_021748877.10.0auxin response factor 18-like
SwissprotQ9ZPY61e-134ARFK_ARATH; Auxin response factor 11
TrEMBLA0A0K9QU550.0A0A0K9QU55_SPIOL; Auxin response factor
STRINGXP_010696146.11e-175(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.21e-114auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]