PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32039.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 521aa MW: 54628.4 Da PI: 7.578

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32039.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Dca32039.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	11.8	0.00075	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Dca32039.1 146 WKCEKCSKKYAVQSDWKAHSKIC 168 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-6	69	92	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	69	92	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	70	92	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.4E-5	70	92	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	111	141	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.6E-4	134	167	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.38E-6	141	166	No hit	No description
SMART	SM00355	140	146	166	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MPADVDDTTM STTVSGGEAS VSSSGGGGDH TDTGPTPPPQ KKKRNQPGMP DPEAEVIALS 60 PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKEVKKRV YVCPESSCVH 120 HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL 180 FSRRDSFITH RAFCDALAEE SARNHPPNGK NKPQPESKPP TLIPTPSLLP PPSPPPPAAP 240 QPQPPLPVPA AAAEPPAAAA TAVSPVLSVP NSVPELIDDP SPVLEEPSPP FAIVAAGING 300 NGSNSSSCSS VNSGNTSSSV FASLFASSTV SATLPSSNPN PGFSDFIQPM SQPECSPREL 360 PPPSSSEMIS LCLATNHGSS IFATAGQECR QYSPPQPVLS ATALLQKAAQ FGTAAGGGSL 420 LCGLGLMSST PSSAPSENLP WATRQIKPEN SSVGPGLGLG LHCDESSGLK ELMIGSSSMS 480 NQPTLDFLGL MTSIGGSLDM SAAATSYQGG EYAGNDLGRS S

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MPADVDDTTM STTVSGGEAS VSSSGGGGDH TDTGPTPPPQ KKKRNQPGMP DPEAEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSNKEVKKRV YVCPESSCVH  120
HDPSRALGDL TGIKKHFCRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAEE SARNHPPNGK NKPQPESKPP TLIPTPSLLP PPSPPPPAAP  240
QPQPPLPVPA AAAEPPAAAA TAVSPVLSVP NSVPELIDDP SPVLEEPSPP FAIVAAGING  300
NGSNSSSCSS VNSGNTSSSV FASLFASSTV SATLPSSNPN PGFSDFIQPM SQPECSPREL  360
PPPSSSEMIS LCLATNHGSS IFATAGQECR QYSPPQPVLS ATALLQKAAQ FGTAAGGGSL  420
LCGLGLMSST PSSAPSENLP WATRQIKPEN SSVGPGLGLG LHCDESSGLK ELMIGSSSMS  480
NQPTLDFLGL MTSIGGSLDM SAAATSYQGG EYAGNDLGRS S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	142	203	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	142	203	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718487.1	0.0	protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-161	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A067K9Z7	0.0	A0A067K9Z7_JATCU; Uncharacterized protein
STRING	XP_010680830.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]