PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32081.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 627aa MW: 69032.4 Da PI: 10.1709

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32081.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	33	65	4	36
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRt 36 W t Ed+ll +av+++G+++W++++++++++R+ Dca32081.1 33 WGTLEDLLLTCAVNRHGTNSWTSVSNELNNHRC 65 9999************************97776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.920.10	1.9E-13	19	30	IPR001487	Bromodomain
Pfam	PF00249	6.0E-6	33	64	IPR001005	SANT/Myb domain
CDD	cd00167	0.00549	33	68	No hit	No description
SMART	SM00297	2.0E-12	122	384	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	1.9E-13	282	383	IPR001487	Bromodomain
SuperFamily	SSF47370	6.54E-15	283	383	IPR001487	Bromodomain
CDD	cd04369	5.94E-13	284	379	No hit	No description
PROSITE profile	PS50014	10.705	294	365	IPR001487	Bromodomain
Pfam	PF00439	8.4E-9	296	368	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence Send to blast
MAEPPTTTTT EVDPTRKPPP PPTPPPLTPQ PLWGTLEDLL LTCAVNRHGT NSWTSVSNEL 60 NNHRCTSLFT PHLCHIKFLD LQRRFSATAT ADAAVWLDEL RRLRVAELKR DLHRYDLSIV 120 SLQLKVKRLK EEREKSITED VDEREKSDEK KTSEIEIPAL DKDLILIGES KSSDRKTEPE 180 VEPAKVEPDR GGEPGRGVDS CNGSSNSKEE ERVVESGELG ESVSDVQSTA SLRRREKEAR 240 EVCGNSSGGE ENQSLGSKFS GGGDGGGIDK EGEGRSGGGE GKSKRFVEFL DVVRTRACGS 300 VFKGRLESQE STKYKSLIKE HIDLGIIQKR VEEGRYSNCH TLFYRDLILL VNNAVIFFSK 360 TSSEHKSAVE LRELATQHFQ THLSIKNGQT LTANPLAAPR KSTKPEVVQA DHTDLKPKLP 420 QLITGPVIAC RKRSSIAGKL STPAAVKPAS SEGLKKDDDK LLSTSFSAVI KKQTRDQNVT 480 PRNSANKNQS SHPSPTQKLS QRNKGESSET KADIKKSSPR ISKQGSRPGK DLLLDVLDSA 540 VKRKIFGNGN GGTLRSDRHK DQGRGSHSGL SKKMAMEKEK EKDERDSSRN KNGRASKKPA 600 TPVAVSGKRG RDGGRDSDPN TKKRQRR

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence Send to blast

MAEPPTTTTT EVDPTRKPPP PPTPPPLTPQ PLWGTLEDLL LTCAVNRHGT NSWTSVSNEL  60
NNHRCTSLFT PHLCHIKFLD LQRRFSATAT ADAAVWLDEL RRLRVAELKR DLHRYDLSIV  120
SLQLKVKRLK EEREKSITED VDEREKSDEK KTSEIEIPAL DKDLILIGES KSSDRKTEPE  180
VEPAKVEPDR GGEPGRGVDS CNGSSNSKEE ERVVESGELG ESVSDVQSTA SLRRREKEAR  240
EVCGNSSGGE ENQSLGSKFS GGGDGGGIDK EGEGRSGGGE GKSKRFVEFL DVVRTRACGS  300
VFKGRLESQE STKYKSLIKE HIDLGIIQKR VEEGRYSNCH TLFYRDLILL VNNAVIFFSK  360
TSSEHKSAVE LRELATQHFQ THLSIKNGQT LTANPLAAPR KSTKPEVVQA DHTDLKPKLP  420
QLITGPVIAC RKRSSIAGKL STPAAVKPAS SEGLKKDDDK LLSTSFSAVI KKQTRDQNVT  480
PRNSANKNQS SHPSPTQKLS QRNKGESSET KADIKKSSPR ISKQGSRPGK DLLLDVLDSA  540
VKRKIFGNGN GGTLRSDRHK DQGRGSHSGL SKKMAMEKEK EKDERDSSRN KNGRASKKPA  600
TPVAVSGKRG RDGGRDSDPN TKKRQRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021770379.1	1e-141	uncharacterized protein LOC110734522 isoform X1
STRING	XP_010672669.1	1e-109	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	2e-54	DNA-binding bromodomain-containing protein