PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32215.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 763aa MW: 88141 Da PI: 7.3862

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32215.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.1e-16	52	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA ++GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++++++eH+Hel+ Dca32215.1 52 FYKIYALSIGFDIRRYSEHKW-DDGTLKTKLIVCNREGKYKSKKKTecvdnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKIDQFVEEHSHELV 144 9*************99998.8888************9999999987666677888999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-13	52	144	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-29	266	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.076	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.6E-4	559	586	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.7E-5	560	580	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MVEMQIVPAE SGAIDAASLI GMDESYLCET AKEDFKPFVG QEFVSVDEAA GFYKIYALSI 60 GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KIDQFVEEHS HELVSVEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY 180 RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD 240 EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL 300 IAKEDFESFN WVFTKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR FCTWHIMNKV 360 SIKYGATRNG CKELLAKLNS IIWDEEIEPA DFDSRWVEIM EEYGIGKGDW FEDSFSIRRQ 420 WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLIE FWMRFESAIE QQRHNKRRLD 480 NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV NTCRCKGYLE RNDVEVTLVE 540 DSVRERVFEV EFSPGTLNVK CSCRLYERKG ILCRHVLWIY TSHAVEKIPD DFVARRWMRS 600 SDSNGGKSKS SLEGGDNADG RQVQLTKLWA EINETVAFLQ HRDLKFTEEM CESLRKFRED 660 HKSSYVVVTK EQEFEKLLGC KASSNISVMP PKHSKNKGSG KRMVSSRSIA IATSNKRKRL 720 CNNCKQMAHH DKRNCPYPVV ESAAAVDSSG EENGEGVDEL SLL

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MVEMQIVPAE SGAIDAASLI GMDESYLCET AKEDFKPFVG QEFVSVDEAA GFYKIYALSI  60
GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR  120
IRLFCLNGLF KIDQFVEEHS HELVSVEDRE FQKLSTSLTE YHKAFILSNI RLNIGATKTY  180
RMIKEHVNGF ENIGATLNQF RNFQRDMKCF IHERDGQLLI DRFKSMEENV PDFFFDYDVD  240
EDGSLRRVIW ADGVGRRNYQ LFGEAISFDP TYSTNKYSMV FTPFTGVDNH KKTITFCGAL  300
IAKEDFESFN WVFTKFLSCM GGKEPEYIIT DQDPGIIKSV SHMFKHCRHR FCTWHIMNKV  360
SIKYGATRNG CKELLAKLNS IIWDEEIEPA DFDSRWVEIM EEYGIGKGDW FEDSFSIRRQ  420
WVQSHCKDLR MGSLLRTTQR SESSNSFFKK FEHKTGTLIE FWMRFESAIE QQRHNKRRLD  480
NGDKHSTEKL ITHLKIEEDA SKVYTAEIFE DFQKEVKYSV NTCRCKGYLE RNDVEVTLVE  540
DSVRERVFEV EFSPGTLNVK CSCRLYERKG ILCRHVLWIY TSHAVEKIPD DFVARRWMRS  600
SDSNGGKSKS SLEGGDNADG RQVQLTKLWA EINETVAFLQ HRDLKFTEEM CESLRKFRED  660
HKSSYVVVTK EQEFEKLLGC KASSNISVMP PKHSKNKGSG KRMVSSRSIA IATSNKRKRL  720
CNNCKQMAHH DKRNCPYPVV ESAAAVDSSG EENGEGVDEL SLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-67	FAR1-related sequence 5