PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32293.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 340aa    MW: 37018.1 Da    PI: 9.0758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32293.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05103125223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +Cp+Cg+ F+  ++L++H+ t H
  Dca32293.1 103 TCPHCGEIFPKIESLEHHQATrH 125
                 8******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280102125IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-23127335No hitNo description
Gene3DG3DSA:3.90.228.101.9E-5129245IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.7E-8254335IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MCSFRDVVQG NTSRVVHRSD NSSPESSSLG QEARLLGRVK TGSGISNGSV SSRSLSGSVR  60
SGVSSHSVSS RGMPLRKLSG CYECHMIIDP SRYPIIPRST ICTCPHCGEI FPKIESLEHH  120
QATRHAVSEL GPEDSGRNIV EIIFKSSWMK KDNPMCKIER ILKVQNTQRT IQRFEDCRDV  180
VKLRANNNTK KNPRCAADGN ELLRFHCTTL TCSLGARASS SLCSSGSSCG VCTIIRHGFQ  240
GNKGVRTTAS SGKAHDTLDC KDERRAMLVC RVIAGRVKRS TSESPLKEDM LVSEASSSSG  300
PYDSVAGPTG LYSNLEDLVV YNARAILPCF VVIYKTLPIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695422.10.0PREDICTED: uncharacterized protein LOC104908063
TrEMBLA0A0J8B8R30.0A0A0J8B8R3_BETVU; Uncharacterized protein
STRINGXP_010695422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-123C2H2-like zinc finger protein