PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32437.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 421aa    MW: 46950.1 Da    PI: 6.4199
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32437.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1610871699
                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 vlp kfae++ gk   +k++ l  +sg sWev++  + +++  + ++GWk+F+ka +L+e+  ++Fk++++s+f   v +f++
  Dca32437.1 10 QVLPSKFAENMAGK--IPKKVYLLGPSGSSWEVEV--STTGDLALVGEGWKDFAKAYNLEENYLLMFKYTQNSSF--EVLIFDQ 87
                59******999777..7889***************..9999899***************************9999..8888875 PP
2B339.31.1e-12307404197
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS...SEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgr...sefelvvk 95 
                 f+ v+ ps v k+  l +p + + ++ ++++++  ++l+    ++W   + +y++++ +  l++GWk+F+  n+L++ D++vFk ++r    + +l+v 
  Dca32437.1 307 FLVVMRPSGVYKRFFLNIPADWVMKNLSSHHQK--VILRV-GDKTWVTIFyNYSRSGHSGGLATGWKNFAVVNNLEDSDVCVFKPVSRkgdATITLNVE 402
                 788999********************7666665..55444.3355544331446666667799*********************665430134445555 PP

                 EE CS
          B3  96 vf 97 
                 +f
  Dca32437.1 403 IF 404
                 55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.563188IPR003340B3 DNA binding domain
CDDcd100175.39E-16386No hitNo description
SuperFamilySSF1019369.22E-19687IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-9888IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-18888IPR015300DNA-binding pseudobarrel domain
PfamPF023625.5E-141087IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-15305405IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-14306405IPR015300DNA-binding pseudobarrel domain
CDDcd100171.57E-15306405No hitNo description
PROSITE profilePS5086310.63307407IPR003340B3 DNA binding domain
SMARTSM010192.4E-11307407IPR003340B3 DNA binding domain
PfamPF023622.7E-10307403IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MCDFDHDFTQ VLPSKFAENM AGKIPKKVYL LGPSGSSWEV EVSTTGDLAL VGEGWKDFAK  60
AYNLEENYLL MFKYTQNSSF EVLIFDQKNS CEKEYSYFVK KGLPKPNEEI DKKRSADETG  120
STEIMEDGDC VLLKKLKKNS ADQGKKNVVE APKTTPFDDF SDKTRDDEVE VINSEGRPIH  180
QVSGSHVSNE AGLLVDVPIM GVEGTNSKGQ SGKPKDGNVA GSSKLSQLNN IQQTPTGKSE  240
KEIYEAVVFG AGNNDNFLSY YLSARVMNGI DTHRLSKEYM SRRRVVTDEE KDAALRRVNE  300
ALTEGSFLVV MRPSGVYKRF FLNIPADWVM KNLSSHHQKV ILRVGDKTWV TIFYNYSRSG  360
HSGGLATGWK NFAVVNNLED SDVCVFKPVS RKGDATITLN VEIFRVVQEI TPLKPLLCSL  420
A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-19B3 family protein