PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32438.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 458aa    MW: 50030.9 Da    PI: 8.2003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32438.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.95.5e-115683299
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 +k+l+l  +sg sW+v +  + +++  + ++GWk+F+k  +L+e+  ++Fk++++ +f   v +f++
  Dca32438.1  5 IPKKLSLIGPSGSSWDVDV--STTGNLAIVGDGWKDFAKTFNLEENNLLMFKYTQNLSF--EVLIFDQ 68
                6789***************..88888899************************998777..8888876 PP
2B332.12e-10344432190
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                 f+ v+ p  v k+  l++p   ++++         +++++l+  +     + ++y +++ +  l++GWk+F+  n+L++ D++vFk  ++  ++
  Dca32438.1 344 FLVVMRPTAVYKRFFLSIPAGWVNQNiccH-----HQKVILRVGEKTWVAFFHNYGRGRHSGGLAAGWKNFAVGNNLEDSDVCVFKPASEkGDA 432
                 778999999**************8885543.....33677777555555677777666666779**********************77653444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.83169IPR003340B3 DNA binding domain
SMARTSM010190.34169IPR003340B3 DNA binding domain
CDDcd100173.37E-9467No hitNo description
Gene3DG3DSA:2.40.330.103.1E-11468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-13468IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-8568IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-13339429IPR015300DNA-binding pseudobarrel domain
CDDcd100177.41E-12343442No hitNo description
SuperFamilySSF1019364.51E-12343431IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.671344440IPR003340B3 DNA binding domain
PfamPF023627.5E-8344435IPR003340B3 DNA binding domain
SMARTSM010190.0019344439IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSDKIPKKLS LIGPSGSSWD VDVSTTGNLA IVGDGWKDFA KTFNLEENNL LMFKYTQNLS  60
FEVLIFDQQN LCEKEYCYFA KKCLPKPNKI DRKRSSDETA SAELMEEDNK DGGGSDCVLS  120
KKLKKCSTDQ GLKNAVEAPR ATPSDDSPND FSNGNDVEVV CSGGTPIHQV SVSLMPNEAG  180
ILDGIPITGL VATNSKGQSG KPRENDTNGI SMLSQMDVIQ QTPTGNGKEE MHEAVVLSAS  240
KKGNALSDAL FAEVMNGNGT PGTGRSCKVG AKRGRPVRRK IPRSGQKPTL KSVLSTYLAI  300
LAFNIISDTR RLSKEYMSHR RVVTDEEKEA ALKRANEAST EDSFLVVMRP TAVYKRFFLS  360
IPAGWVNQNI CCHHQKVILR VGEKTWVAFF HNYGRGRHSG GLAAGWKNFA VGNNLEDSDV  420
CVFKPASEKG DATLILDTQI FRVVPEITPL MPLLCSVV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-19B3 family protein