PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32496.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 183aa    MW: 21279.8 Da    PI: 8.2981
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32496.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.73.8e-0844136790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek....dgk...wevtkle..leHnHela 90 
                 A++ GF ++k+++ ++ +r+ e   + f+Cs++g+++   +  e+ +++ ++++++C+ +++  +++    +++   w++ + e    HnH+l+
  Dca32496.1  44 AQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-ENPKKKLKTQKCDCRFRIRAVQNYhfvnNKRvvlWNIVTSEtfGYHNHALT 136
                 8899***99988765549999**************9998877.666777777777777777644443344222222366665555578999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-544136IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSDAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NVIAQDNGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK GVYDPENPKK KLKTQKCDCR FRIRAVQNYH FVNNKRVVLW  120
NIVTSETFGY HNHALTKYKD GHRGYAGLDE DEKAFVRQEY SSQFYLETSE PVFIKKVPIN  180
LNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793PKKKLKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-