PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32524.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 374aa    MW: 40909.4 Da    PI: 6.0207
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32524.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78.3e-083243572154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  Dca32524.1 324 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 357
                 469*****************************87 PP
2ELK292.4e-10278299122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  Dca32524.1 278 ELKHELKQGYKEKIVDIREEIL 299
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-20100144IPR005540KNOX1
PfamPF037903.4E-18103143IPR005540KNOX1
SMARTSM012567.5E-28164220IPR005541KNOX2
PfamPF037911.9E-19171219IPR005541KNOX2
PROSITE profilePS512139.969278298IPR005539ELK domain
SMARTSM011886.1E-4278299IPR005539ELK domain
PfamPF037898.5E-7278299IPR005539ELK domain
PROSITE profilePS5007111.726298361IPR001356Homeobox domain
SMARTSM003892.4E-11300365IPR001356Homeobox domain
SuperFamilySSF466892.87E-16300364IPR009057Homeodomain-like
CDDcd000863.03E-11301362No hitNo description
Gene3DG3DSA:1.10.10.602.9E-25305362IPR009057Homeodomain-like
PfamPF059201.0E-17318357IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAYHQNHHMQ QQSDHQMATQ FAAEDTRPPD HHHHHSGGGG GPNWLNSAIS GGGNFLNLHS  60
VEDTAALAEL TQQSADKAAA AEDGGVGGGG GGERVNWENA KWKAEIMTHP LYEQLLSAHV  120
ACLRIATPVD QLPRIDAQLS QSQNVVAKYS ALANAAAAAG GGGGGGGGGL DEKELDQFMT  180
HYVLLLCSFK EQLQQHVRVH AMEAVMACWE IEQSLQSLTG VSPGEGTGAT MSDDDEDDPI  240
DGDSNLFDGS LDGADTMGFG PLIPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR  300
KRRAGKLPGD TTSVLKAWWQ SHSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH  360
SNPSSSTAVK SKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A8e-13301365872Homeobox protein PKNOX1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862211.10.0homeobox protein knotted-1-like 2
SwissprotP480001e-173KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A0K9R9E20.0A0A0K9R9E2_SPIOL; Uncharacterized protein
STRINGXP_010665744.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-166KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]