PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32657.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 342aa    MW: 38023 Da    PI: 7.0811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32657.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12162209355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Dca32657.1 162 KEHVIAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYVKQLQ 209
                 6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.012159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17163225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.51E-12164213No hitNo description
SuperFamilySSF474591.57E-16164226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDELSFINQV NSLEELFRDP ILPSYNNGFD HQQVSTNTQV LSCKRSAHQF DHKMAESPII  60
SKQFKTNDGN SYKINHTHQL NHSVDRPSYK SNMLSFGNSN NQNQNKNNNT TSQFLLTPKL  120
EEEIAVSSVV IDEQSYILGT PQVAKKGTNT TTTTPLSLAQ SKEHVIAERK RREKLSQRFI  180
ALSAIIPGLK KMDKASVLGD AIKYVKQLQG KVETLEEETK KKSVESAKLV KKYLVISEED  240
NDDELSLAQT SFSGGSNDGL IPEIEVKFSD KDILVRIHCV KKNGVLEKII SQVVDLHLEV  300
VNSSALAFGG SSLDVTIIAK ITGTSGKTHM TESIILDQIY LT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-15164218963Transcription factor MYC2
5gnj_B6e-15164218963Transcription factor MYC2
5gnj_E6e-15164218963Transcription factor MYC2
5gnj_F6e-15164218963Transcription factor MYC2
5gnj_G6e-15164218963Transcription factor MYC2
5gnj_I6e-15164218963Transcription factor MYC2
5gnj_M6e-15164218963Transcription factor MYC2
5gnj_N6e-15164218963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
3220231KKSVESAKLVKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9QV614e-75A0A0K9QV61_SPIOL; Uncharacterized protein
STRINGXP_010691492.18e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-44bHLH family protein