PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32672.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C2H2
Protein Properties Length: 898aa    MW: 98690.1 Da    PI: 5.258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32672.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001288311123
                 EEETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                 y+C+ C+ +F  k+ + +H+++ H
  Dca32672.1 288 YECHTCNITFDVKDKYLQHLMStH 311
                 99******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.890.101.1E-6160217IPR001739Methyl-CpG DNA binding
PROSITE profilePS509829.974162234IPR001739Methyl-CpG DNA binding
SuperFamilySSF541713.27E-9166220IPR016177DNA-binding domain
PfamPF014298.0E-8171219IPR001739Methyl-CpG DNA binding
SuperFamilySSF576673.77E-5287311No hitNo description
PROSITE profilePS501578.642288316IPR007087Zinc finger, C2H2
SMARTSM003550.096288311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280290311IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-5382409No hitNo description
SMARTSM003550.13387409IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85387409IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MAITTANHHH NHHLLLSSVD MSTLSPSELH SLSLLSSSSA AEGADPPATN SRGVDGGGSS  60
TENDRSEYVK IVKFLKEYLR YDDDNPVNWK KKKRESEARI EIVNRNGVVV DLAALEMDDG  120
GGGPFAAELR RLTAEREREE ELLEVLAGIE GSWCSTRKKR RIVDACALGD ALPVGWKVVI  180
ALRRKGGRFS AYCRRYISPT GEHFSTCKEV SSFLKSHFGI NDTKLLRDGR GELQQLPSVN  240
LGNLQCVNSK DNSSMLAICN ASTSETREKD VGVSGIDNLP DVQVSDLYEC HTCNITFDVK  300
DKYLQHLMST HERTTKRYRL NPAENNSPAG NKLVIRDANY GCRTPNTNFN AQGKSSEQLP  360
STEKKKKKKR GIVSTVADGV IMRDGKFECQ FCDKSFEERR RYLGHLGNHI KGSIKSTRGP  420
PVPLPGRLQA PNTNAISTNI GSNSKMDALV QIAHNSIRNI FPDVPEKVPP GFNSIGQISV  480
AKNDFIRNNA DFVPGMNSSL GVAEPGVDKF DGVGKDLSLQ LNPCSTVNRT AKWCPGEAKK  540
ENREVKSQSE ESVPPLNKGS DILVKDKEVG GERPGINVYE TPKISSAEAV HSSDKVGEKT  600
MTNGNISGSG SRHDDDVEVE KTSSELKIDS QVRATFMADD SHKKVDLEHN YCFDAMTIPA  660
VETNTQVDDS TINCVVNSAL MKDAGSAEDR DEPVTINFLA YNQKPSDVDS SVEKVQSKCM  720
EKNELGDAQG HENSDLATIA RDARAIGCTA LLNPSSPFDD IFGKAGQNIC SLDPNLESGN  780
EFEFMKLDEI EPQMYKYNSM NGDDSIFLPE VSMDLEHNTG FNIEFNASAN PESEFPEAAP  840
SRSSTTLMTC VWCCSEFSHE IVELEPQPDS VGFMCPDCRT KISKQFNDLE SNFSLNSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363369KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-