PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca32779.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

SBP

Protein Properties

Length: 1017aa MW: 112196 Da PI: 7.1556

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca32779.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.7e-40	164	241	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C +dls+ak+yhrrhkvC hska++v+v ++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Dca32779.1 164 VCQVDDCMEDLSKAKDYHRRHKVCVPHSKATNVVVGRQTQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 241 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.4E-33	158	226	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.146	162	239	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.83E-36	163	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.5E-30	165	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.04E-6	811	910	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-5	811	910	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.80E-6	815	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1017 aa Download sequence Send to blast
MEEVGAQVAA PLFIHQSRFR EAGLVGIKRS LCHKQPHSQI ELARDGGWSP KDWEWDSARF 60 VAIARQPETN TLCLGISPGD NREGGVFDPV LRDSTASRAS ISHDKGDKNG SDLRLQVGDA 120 HMSPSKTNGG NVQSSDSAEE MGPSSRPNKK VRSGSPGSGG NYPVCQVDDC MEDLSKAKDY 180 HRRHKVCVPH SKATNVVVGR QTQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ 240 PEDAASLGVH PTNGNDSVSG NLDIVNLLTV LARGQGIVEK NVSNCPTLPD KNQLIEILSK 300 ISALPRAPIP PTGATNPSGT TKNTFEQAAL GRNTMGSNPA TKSNMMDIFE RSSSSYQSPT 360 DDSVGQVQDP RIISPLQLFS PSPGFDSSPN MVSPQKYFSS DSCSPSDERS QSSVPITRML 420 FPLGTTSEMD RTDRMSVCEE ANVEASQTGN IACGTTLELF SLGNRTVSNI LQRLPDQAGY 480 TSSSGSDHSP PSFNSDPQKD RTGRIMFKLF DKDPGQFPGG LRTQIYNWLS DSPSEMESFI 540 RPGCVVLSVY VSMPFSAWEK LEDNFTAQVN NLFHGSEAEF WRSGRFSVNI GRQLAFHKDG 600 KFNFGKPWSM PNSPELVVVS PLAVVSGQAT SLVIRGRNLT SPGTKIHCAY MGGYSSKDVS 660 GSTSQGFTLD EIRLSDFKVH AATSFLGRCF IEVENGTRGN SFPIIIADAK ICQELRLLEH 720 EFDDRSQDLQ SLGSHEEILR FLNELGWLFQ RKSSSDVANH DFLPHRVQYL LTFSIERDYC 780 ALVKTVLDIF VEEVSNKTDE LSTECVEAVA KTNLLHRAVK KRSKRMVDLL FHYSIPDDDG 840 VNKRYVFLPD LKGPGGITPL HLAACTSGSY DIVDILTDDP MEIGLQCWKS LLDDNGHSPS 900 AYATMRNDHS LNSLVARKLV DRRNSQVSLS ITNEIVESLE LSDVRQRSSL QFTKKPDSCS 960 KCALMMTYSS MPGSHGMLHR PFIHSMLGIA AVCVCVCLFF KSMSVPLNWE NFSYGSM

Sequence ? help Back to Top

Protein Sequence Length: 1017 aa Download sequence Send to blast

MEEVGAQVAA PLFIHQSRFR EAGLVGIKRS LCHKQPHSQI ELARDGGWSP KDWEWDSARF  60
VAIARQPETN TLCLGISPGD NREGGVFDPV LRDSTASRAS ISHDKGDKNG SDLRLQVGDA  120
HMSPSKTNGG NVQSSDSAEE MGPSSRPNKK VRSGSPGSGG NYPVCQVDDC MEDLSKAKDY  180
HRRHKVCVPH SKATNVVVGR QTQRFCQQCS RFHPLSEFDE GKRSCRRRLA GHNRRRRKTQ  240
PEDAASLGVH PTNGNDSVSG NLDIVNLLTV LARGQGIVEK NVSNCPTLPD KNQLIEILSK  300
ISALPRAPIP PTGATNPSGT TKNTFEQAAL GRNTMGSNPA TKSNMMDIFE RSSSSYQSPT  360
DDSVGQVQDP RIISPLQLFS PSPGFDSSPN MVSPQKYFSS DSCSPSDERS QSSVPITRML  420
FPLGTTSEMD RTDRMSVCEE ANVEASQTGN IACGTTLELF SLGNRTVSNI LQRLPDQAGY  480
TSSSGSDHSP PSFNSDPQKD RTGRIMFKLF DKDPGQFPGG LRTQIYNWLS DSPSEMESFI  540
RPGCVVLSVY VSMPFSAWEK LEDNFTAQVN NLFHGSEAEF WRSGRFSVNI GRQLAFHKDG  600
KFNFGKPWSM PNSPELVVVS PLAVVSGQAT SLVIRGRNLT SPGTKIHCAY MGGYSSKDVS  660
GSTSQGFTLD EIRLSDFKVH AATSFLGRCF IEVENGTRGN SFPIIIADAK ICQELRLLEH  720
EFDDRSQDLQ SLGSHEEILR FLNELGWLFQ RKSSSDVANH DFLPHRVQYL LTFSIERDYC  780
ALVKTVLDIF VEEVSNKTDE LSTECVEAVA KTNLLHRAVK KRSKRMVDLL FHYSIPDDDG  840
VNKRYVFLPD LKGPGGITPL HLAACTSGSY DIVDILTDDP MEIGLQCWKS LLDDNGHSPS  900
AYATMRNDHS LNSLVARKLV DRRNSQVSLS ITNEIVESLE LSDVRQRSSL QFTKKPDSCS  960
KCALMMTYSS MPGSHGMLHR PFIHSMLGIA AVCVCVCLFF KSMSVPLNWE NFSYGSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	154	238	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021717801.1	0.0	squamosa promoter-binding-like protein 14
TrEMBL	A0A0K9R1B9	0.0	A0A0K9R1B9_SPIOL; Uncharacterized protein
STRING	Gorai.002G112200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14