PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca32882.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 311aa    MW: 35084.9 Da    PI: 8.0833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca32882.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.7e-1181124855
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  Er RR+++++ f +L +llP++     +K +K +i+ +A++ Ik Lq
  Dca32882.1  81 TERERRKKMRNMFTNLHSLLPHL----PPKADKTTIVDEAINSIKTLQ 124
                 6*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.40573123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1476135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1377134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-1078128No hitNo description
PfamPF000105.8E-881124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-681129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTKANHESEP FSWDDHSWIN LCNEVPNFNN AASEKAVSIA ESEDERAKKR GRGDTKKAKE  60
KRENMVGKNG ETLDHEIHIW TERERRKKMR NMFTNLHSLL PHLPPKADKT TIVDEAINSI  120
KTLQTTLQRL QKQKLKRFQG CPSNTLTNDH SSVAATSTLA MLSSRESFMA NQVSSTINNN  180
NNNNNNNNNN EFSNSRSNSD NNNNNNNNNN NNNNNNNNNN SACLLASASR LQTTTIQTWT  240
SPNVVLNIYG NDAQFVVYVS KKHGLLTTLC CVLEKHRLEV ANGACDQFPE LMNVEEICKQ  300
AAAEMMMWIS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652AKKRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690743.11e-100PREDICTED: transcription factor bHLH95
STRINGXP_010690743.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-24bHLH family protein