PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33005.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ARF
Protein Properties Length: 678aa    MW: 76094.6 Da    PI: 7.1581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33005.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31.1e-21148248198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +k+a+e+       ++++ +  +l+ +d+++ +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el
  Dca33005.1 148 FCKTLTASDTSTHGGFSVLRKHADEClprlnmtQLPPWQ--ELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENGEL 242
                 99****************************998888877..7************************************************..449999* PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  Dca33005.1 243 RVGVRR 248
                 ****98 PP
2Auxin_resp108.38.3e-36274356183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++t+++F+v+Y+Pr+s+seF v+v+k++++ ++k+svGmRfkm+fe+++++err+sGt+vg++++++  W +S WrsLk
  Dca33005.1 274 AAHAIQTGTMFSVFYKPRTSRSEFLVSVNKYLETKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGINKSSSPIWDDSDWRSLK 356
                 79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-41139277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-37144263IPR015300DNA-binding pseudobarrel domain
CDDcd100177.26E-19146248No hitNo description
PROSITE profilePS5086310.644148250IPR003340B3 DNA binding domain
PfamPF023622.4E-19148248IPR003340B3 DNA binding domain
SMARTSM010193.3E-20148250IPR003340B3 DNA binding domain
PfamPF065072.3E-33274356IPR010525Auxin response factor
PfamPF023093.9E-6549591IPR033389AUX/IAA domain
SuperFamilySSF542771.77E-12552632No hitNo description
PROSITE profilePS5174526.765555648IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MEVIEKCGLE SSKPFYMVGS RVFSFTVKCQ SCRGHGRPQA QGTMRRWLIH LDALYKELWY  60
ACAGPLVNIP REEERVYYFP QGHMEQLEAS TQQGLEQQMP SFNLPSKFLC KVAHIDLRIT  120
LVPQRDQIEI TEPDPPVPEP ERCNVHSFCK TLTASDTSTH GGFSVLRKHA DECLPRLNMT  180
QLPPWQELVA TDLHNSEWHF RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG  240
ELRVGVRRVM RQLNHMPSSV ISSHSMHLGV LATAAHAIQT GTMFSVFYKP RTSRSEFLVS  300
VNKYLETKSH KFSVGMRFKM RFEGDEVPER RFSGTIVGIN KSSSPIWDDS DWRSLKVQWD  360
DPSSIPRPEM VSPWEIEPLV ANNSETSQPV PKNKRSRPTV MPSAASDIPS LGIWKPPTEL  420
PSIGCSKAEH ARDQFPSVTR ASNLGFAAYS SLPLASSKPL FWSTRTENIS DTFAPVVDKE  480
PGEKRKNGGV GCRLFGVELV DRFAGATISE KTSEEHPISS PEAESDRSNV DRLIVPSLSG  540
GDQRSPPESQ SKQTRTCTKV HMHGMAVGRA VDLTCLECYD DLLKKLENMF NIKGELSGPP  600
GKWQVVYTDD EDDIMMVGDD PWPEFCGMVR KIFVYTAEEV KRLNPKNKIS AAEDAKPGIM  660
DTEMPVTSEE QSSAVGPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.05237917355Auxin response factor 1
4ldw_A0.05237917355Auxin response factor 1
4ldw_B0.05237917355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021740640.10.0auxin response factor 1-like
RefseqXP_021740648.10.0auxin response factor 1-like
RefseqXP_021740656.10.0auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A0K9R8S60.0A0A0K9R8S6_SPIOL; Auxin response factor
STRINGXP_010682136.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]