PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33037.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 101aa    MW: 11886.7 Da    PI: 10.2355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33037.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.3e-1014683186
                .--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3 31 eesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                +++  ++l de+ + W vkl+ ++++g+ ++++GWk++v a++ + + +v F+l++
  Dca33037.1 14 RRHCFIKLIDENEKPWIVKLC-KRSDGQAYFSQGWKQYVTAHNFRPRTVVDFQLIE 68
                4555699*************4.666666999*********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.404180IPR003340B3 DNA binding domain
PfamPF023621.1E-71069IPR003340B3 DNA binding domain
CDDcd100175.14E-91170No hitNo description
Gene3DG3DSA:2.40.330.108.0E-101471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-101571IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MTTYAVSSLA LENRRHCFIK LIDENEKPWI VKLCKRSDGQ AYFSQGWKQY VTAHNFRPRT  60
VVDFQLIETG RIPDSLQSNI RLWHCPQPGR GKLARRDLVE R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.13e-07B3 family protein