PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca33215.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 455aa MW: 51630.2 Da PI: 9.5267

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca33215.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.7e-13	14	62	1	46
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT..TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmg..kgRtlkqcksrwqk 46 +g+W++eEd +l+ ++ +G+g +W + ++++ gRt++++k++w++ Dca33215.1 14 KGPWSPEEDAKLKSYIDTYGTGnNWIALPQKIAqlPGRTDNDIKNYWNT 62 79*******************77777777777778********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.0E-12	8	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.596	9	68	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-20	10	68	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-11	13	66	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-11	14	62	IPR001005	SANT/Myb domain
CDD	cd00167	2.30E-9	16	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYID TYGTGNNWIA LPQKIAQLPG RTDNDIKNYW 60 NTRLKKKMLG RRKQNQQGGI DGAKDEVPAL STSALERLQL HLQLQNQQPH ENSFSYLNNP 120 SLCPKLHPLI QEKLLQNNLQ SLNQIQQFSY NNNTVDFFNQ NPNFLHPQEI KNNNHNDIAE 180 IEELDNSSIN GSTSSDSTRD NNNNNNNNND NNFTSFVATT PSVIKCDKRF TEMQRITSFQ 240 RDLNELLSVD KEVDLRSLII LDWGCKQIYA SLKMLDWGCL GTMAAGRLMP ALTFWTGAVN 300 RLMPALTFCR RGFLRSEPPR SRREWSYPIS GLAVSESVFA PTPAKLPVAG QGMADREVAG 360 PRWPLAGCRW RFQTVAEAEG PQLRQDGPWW PLAAYEWPLT WRPWSWWPSK RSRPSGGRGG 420 RTGGGSQRSC KRWPVIWSAV QMAVAGDDLT AVWRW

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MGRAPCCDKA NVKKGPWSPE EDAKLKSYID TYGTGNNWIA LPQKIAQLPG RTDNDIKNYW  60
NTRLKKKMLG RRKQNQQGGI DGAKDEVPAL STSALERLQL HLQLQNQQPH ENSFSYLNNP  120
SLCPKLHPLI QEKLLQNNLQ SLNQIQQFSY NNNTVDFFNQ NPNFLHPQEI KNNNHNDIAE  180
IEELDNSSIN GSTSSDSTRD NNNNNNNNND NNFTSFVATT PSVIKCDKRF TEMQRITSFQ  240
RDLNELLSVD KEVDLRSLII LDWGCKQIYA SLKMLDWGCL GTMAAGRLMP ALTFWTGAVN  300
RLMPALTFCR RGFLRSEPPR SRREWSYPIS GLAVSESVFA PTPAKLPVAG QGMADREVAG  360
PRWPLAGCRW RFQTVAEAEG PQLRQDGPWW PLAAYEWPLT WRPWSWWPSK RSRPSGGRGG  420
RTGGGSQRSC KRWPVIWSAV QMAVAGDDLT AVWRW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	418	424	GGRTGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021755911.1	2e-76	transcription factor MYB36-like
TrEMBL	A0A0K9QMI2	3e-68	A0A0K9QMI2_SPIOL; Uncharacterized protein
STRING	XP_010688500.1	4e-61	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	6e-38	myb domain protein 36