PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33489.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family CO-like
Protein Properties Length: 401aa    MW: 44077.2 Da    PI: 7.0898
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33489.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.22.3e-052964437
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                + C+ ++   + l+C+ + ++lC  C ++ H    H
  Dca33489.1 29 KPCDVCHTASALLYCRADATFLCGACDFKVHAPasH 64
                57****************************943664 PP
2zf-B_box26.11.7e-0881126342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Dca33489.1  81 VWMCEVCEQAPAAVTCKADAAVLCVSCDHDIHSAnplarrHERVPV 126
                 689*****************************66899999999986 PP
3CCT706.2e-24322365144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Dca33489.1 322 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRS 365
                 9****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.105.9E-42182IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM003360.0252669IPR000315B-box-type zinc finger
CDDcd000213.03E-63066No hitNo description
PROSITE profilePS501198.6743170IPR000315B-box-type zinc finger
PROSITE profilePS5011910.82279126IPR000315B-box-type zinc finger
SMARTSM003368.2E-1479126IPR000315B-box-type zinc finger
PfamPF006431.3E-681126IPR000315B-box-type zinc finger
CDDcd000211.94E-882126No hitNo description
PROSITE profilePS5101716.817322364IPR010402CCT domain
PfamPF062036.4E-18322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLATQLPIEK SNTNNNIKGL LTGWGLMAKP CDVCHTASAL LYCRADATFL CGACDFKVHA  60
PASHHHQQNQ HLMMMARHER VWMCEVCEQA PAAVTCKADA AVLCVSCDHD IHSANPLARR  120
HERVPVVPFF ESVADSADRS NAATDVNSVF LAKDDGDDPE AWLIPNPNSS FLYNESCLLG  180
CGGKNLDKFS QQQQMINPQQ SYESLSFAIS DSVVPTQSQG NLNFPNKSNH LFDSSGEIDF  240
TQPAKLNNTK NKFNNNDNNR QQIFSSFDFS AIQHSVSSSE IGVVPEGNTT SPSEVSQTFS  300
NSAAGVGVAA AARGDPVTAL DREARVLRYR EKRKNRKFEK TIRYASRKAY AESRPRIKGR  360
FAKRSGKNET SDLNQILGSD FGSTPGSNFL LEQDYGVVPT F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.11e-124zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX531e-123A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.16e-80CONSTANS-like 5