PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca33501.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 538aa    MW: 59169.1 Da    PI: 7.7225
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca33501.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.74.2e-27135192259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +D y+WrKYGqK+vk+s  +rsY+rCts +C++kkkv++ ++ ++++e++Y+g+Hnh+
  Dca33501.1 135 SDTYSWRKYGQKHVKSSGSSRSYFRCTSLSCCAKKKVQHLDDSGEIIEVIYKGDHNHD 192
                 69*******************************************************7 PP
2WRKY92.63e-29368425259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vkg+ +prsYYrC+s+gCpv+k+ver+++    ++ +YegeH+h+
  Dca33501.1 368 SDGYKWRKYGQKMVKGNIHPRSYYRCSSPGCPVRKHVERATDGSLSIVAMYEGEHDHD 425
                 7****************************************666667789*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-24128194IPR003657WRKY domain
SuperFamilySSF1182908.24E-23132194IPR003657WRKY domain
SMARTSM007746.7E-27134193IPR003657WRKY domain
PROSITE profilePS5081121.023135194IPR003657WRKY domain
PfamPF031069.9E-21136192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-29352427IPR003657WRKY domain
PROSITE profilePS5081130.366362427IPR003657WRKY domain
SuperFamilySSF1182901.26E-25365427IPR003657WRKY domain
SMARTSM007743.2E-32367426IPR003657WRKY domain
PfamPF031061.4E-23369424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MVFDEKTQKQ LGTNLCKIEE SCDFSSDSSK KFSPLTSSSS SSSKTSSFCK LLEGVVLAAN  60
SAVSSQSTAV FQGQFGTSHQ EALGTVIRQP KTQDEALESS TEQPPILQPG TKSQNPVTVA  120
QEHMSSPREP NTPKSDTYSW RKYGQKHVKS SGSSRSYFRC TSLSCCAKKK VQHLDDSGEI  180
IEVIYKGDHN HDPPLNIIKV FSRKKSFGDA SVKKADDTCR EEPKQHVLQL TYESRDSHSN  240
DSSAETLKSD VNQQHNKTPD TIARQVGSFW IWFNAGLVES GLIVLVRVNS GLGSIHQNEL  300
STLPREVERG RSGNPNELGL IETMNERDIP IKKRRIKESG KESSQSVYRT FKEPKIVVQA  360
PDGAGINSDG YKWRKYGQKM VKGNIHPRSY YRCSSPGCPV RKHVERATDG SLSIVAMYEG  420
EHDHDKPLLK KQHGSLPTPS VLVNAHTDIP DKSSPVKPEE EKMASPSRAP SPQPTQSSTI  480
DCDEPKAVPE AGTQKVLEPT QLSSNDCDEP KAVPEAGTQK VLDSAQTLLS VNIELESC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-24355427274WRKY transcription factor 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336KKRRIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.17e-47WRKY DNA-binding protein 3