PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca33984.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

TALE

Protein Properties

Length: 599aa MW: 66837.3 Da PI: 5.7029

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca33984.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.9	3.4e-08	412	449	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA++ gLt qV +WF N R + Dca33984.1 412 FEHflHPYPKDSEKIMLARQAGLTRGQVANWFINARVR 449 664459******************************88 PP
2	BELL	118.8	2.6e-38	278	349	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q+lq+k kLls+l+eVd++Ykqy +q+q+++ssF++vag g+akpYt+lAlk+iSrhFrcL+dai++qi Dca33984.1 278 EKQDLQNKLDKLLSMLDEVDRKYKQYGHQMQILVSSFDIVAGNGAAKPYTALALKTISRHFRCLRDAITDQI 349 6899*******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	8.8E-57	201	347	IPR006563	POX domain
Pfam	PF07526	2.4E-48	206	346	IPR006563	POX domain
PROSITE profile	PS50071	11.726	390	453	IPR001356	Homeobox domain
SMART	SM00389	1.8E-7	393	457	IPR001356	Homeobox domain
CDD	cd00086	9.00E-11	393	454	No hit	No description
SuperFamily	SSF46689	2.69E-16	394	460	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-26	396	459	IPR009057	Homeodomain-like
Pfam	PF05920	6.8E-16	410	449	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MGTYYPTTSA QIDVLSAPYN QDQKFTSFSE PNVLHGNMMM YLNPNTSTGN FSEISSLNPN 60 NGEQFSSMSG RNEMMFIPPT SDHTSMQAIS CPLNAGTVKN VDKFIPGLNS RDQLGMMEGE 120 QTFQSLSLSL STQMSTPAFE YQYTNPGMNL QSESSVRQMS FKIDESFSHG DGNNTIRFGL 180 PNSSPQFSMS AKDVNFGQYQ SGVASVLLKS KYLKAAQQLL DEIVNVREAV KRHELGKDQV 240 SGKVEDGSKE SRGESQPPAD ANESDIGSSS ANELSSAEKQ DLQNKLDKLL SMLDEVDRKY 300 KQYGHQMQIL VSSFDIVAGN GAAKPYTALA LKTISRHFRC LRDAITDQIQ ATRKSLGELD 360 NGMGAPIPRL RYVDQQLRQQ RALQQFGMMR HAWRPQRGLP ETAVTILRAW LFEHFLHPYP 420 KDSEKIMLAR QAGLTRGQVA NWFINARVRL WKPMVEEMYK EEFGEAEINC SEDNTTHEMQ 480 ESSTSMAHDS KANVTHNTEM KGHSSSNSGQ HVNTLMNNDL NHGFYTTDLL VTSGAYQMSE 540 LGNFSVDNQV SLDLGLQHPA DADVVTRFQV NPTTSNYQYT GQGNQQDNSF GNQHIDFVT

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MGTYYPTTSA QIDVLSAPYN QDQKFTSFSE PNVLHGNMMM YLNPNTSTGN FSEISSLNPN  60
NGEQFSSMSG RNEMMFIPPT SDHTSMQAIS CPLNAGTVKN VDKFIPGLNS RDQLGMMEGE  120
QTFQSLSLSL STQMSTPAFE YQYTNPGMNL QSESSVRQMS FKIDESFSHG DGNNTIRFGL  180
PNSSPQFSMS AKDVNFGQYQ SGVASVLLKS KYLKAAQQLL DEIVNVREAV KRHELGKDQV  240
SGKVEDGSKE SRGESQPPAD ANESDIGSSS ANELSSAEKQ DLQNKLDKLL SMLDEVDRKY  300
KQYGHQMQIL VSSFDIVAGN GAAKPYTALA LKTISRHFRC LRDAITDQIQ ATRKSLGELD  360
NGMGAPIPRL RYVDQQLRQQ RALQQFGMMR HAWRPQRGLP ETAVTILRAW LFEHFLHPYP  420
KDSEKIMLAR QAGLTRGQVA NWFINARVRL WKPMVEEMYK EEFGEAEINC SEDNTTHEMQ  480
ESSTSMAHDS KANVTHNTEM KGHSSSNSGQ HVNTLMNNDL NHGFYTTDLL VTSGAYQMSE  540
LGNFSVDNQV SLDLGLQHPA DADVVTRFQV NPTTSNYQYT GQGNQQDNSF GNQHIDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	1e-15	399	457	5	63	Homeobox protein Meis2
3k2a_B	1e-15	399	457	5	63	Homeobox protein Meis2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672737.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_010672747.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_010672754.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Refseq	XP_019104073.1	0.0	PREDICTED: BEL1-like homeodomain protein 3 isoform X1
Swissprot	Q9FXG8	1e-116	BLH10_ARATH; BEL1-like homeodomain protein 10
Swissprot	Q9SIW1	1e-116	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A0K9QQ74	0.0	A0A0K9QQ74_SPIOL; Uncharacterized protein
STRING	XP_010672737.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-102	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]